Escherichia coli O150 H5 SE15 (commensal): ECSF_1341
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Entry
ECSF_1341 CDS
T02077
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ese
Escherichia coli O150:H5 SE15 (commensal)
Brite
KEGG Orthology (KO) [BR:
ese00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ese03019
]
ECSF_1341
Enzymes [BR:
ese01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECSF_1341
Messenger RNA biogenesis [BR:
ese03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECSF_1341
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
APHB_HrpA
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
ResIII
PhoH
DUF6145
AAA_16
NTPase_1
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BAI54881
LinkDB
All DBs
Position
1444221..1448066
Genome browser
AA seq
1281 aa
AA seq
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MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQQSAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQAADEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPADY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKTRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELIIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEVRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgacagattgcgtttttctcgccgtctgcacggtgtgaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggagattacttacccggacaatttgccggtt
agtcagaaaaagcaggacattctcgaagcgattcgtgaccaccaggtggtgatcgtcgcc
ggggaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctggggcgc
gggattaaagggctgatcggccatacccagccgcgtcggctggcggcgcgaacggtggcg
aaccgtattgcggaagagctaaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgtcagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcggagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcg
cacgaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgc
tatcgcccgattgttgaagaagccgatgataccgagcgcgatcagttgcaggcgattttt
gacgccgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagcggc
gagcgagaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaa
atcttgccgctttatgcacggctttccaacagcgaacagaaccgcgtgttccagtcgcac
agcgggcgacgcattgtactggcgaccaacgtcgcggaaacctcgctgaccgtaccgggt
attaaatacgttatcgacccaggtacagcgcgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgagccaatttcgcaggcttcagctaatcagcgtaaaggccgc
tgtggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctttcg
cgcccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcag
atgaccgcactgggcttgggcgatatcgccgcattcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccactgatgaa
cagcaaagtgcttataaactgacgccgctcggtcgtcagctctcgcagttgcctgtcgac
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacgtccgcgctctccattcaggatccgcgcgagcgtccgatggataaacagcag
gcagctgacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctggcatttgtg
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgc
ctgtgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggattat
cgcgaaattcacattgcgttgctgaccggtttgctttcgcatatcggcatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggt
ttattcaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tgggggcgcattgctgcgcggatcgacccggaatgggtggagccagttgctcagcatttg
attaaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccag
atcgatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgcgaaaacctgaaactacgggcggaagtagaagagctg
gaacacaaaactcgtcgccgcgatattctggtggatgacgaaacgttgtttgagttctac
gaccagcgcatcagtcacgatgtgatctctgcacgccatttcgacagttggtggaaaaaa
gtcagccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggg
gcggaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctg
cgtttgagttatcagtttgagccgggggcagatgctgacggcgtgaccgtacatattccg
ctgccgctgcttaaccaggttgaggagagcgggtttgagtggcagatccccggcctgcgc
cgtgagctgatcatcgccctgattaaatcgttgccgaagccggtacgccgtaattttgta
cctgcgccaaactatgccgaagcgtttttaggccgcgtcacaccgctggaattgccgttg
ctcgacagccttgaacgagagcttcggcggatgactggcgtcaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaa
aacaagaagctaaaagaagggcgctcattacaggatctgaaagacgccctgaaaggcaaa
gtgcaggaaacgctgtctgccgtggcggatgacggtatcgagcagagcggtttacatatc
tggagttttggtcaactgccggaaagctacgagcagaagcgcggcaactacaaagtgaag
gcttggccggcgctggtggatgagcgtgacagcgtagcgatcaaactgtttgataacccg
ctggaacagaagcaggcaatgtggaacggtcttcgccgtttactgctgctaaatattcca
tcgccgatcaagtacttgcacgaaaagctgccaaacaaagccaagctggggctgtacttt
aacccgtatggcaaagtgctggagctgatcgatgactgtatctcctgcggtgtggatcaa
ctgatcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaa
aaagtccgtgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatc
ctcactgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcg
ctggggctttctgacattaaagcgcagatgggcgggctggtgtatcgcggttttgtcact
ggtaacggcttcaaacgactgggcgacacgctgcgatatttgcaggcaattgaaaaacga
ctggaaaaactggcggtcgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactaccgcctgcacgtcgtgaggatgaa
gacgtgaaagaggtccgctggatgatagaagagctgcgcgttagttacttcgctcaacaa
cttggcacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagc
ggttaa
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