Escherichia coli O150 H5 SE15 (commensal): ECSF_2996
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Entry
ECSF_2996 CDS
T02077
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ese
Escherichia coli O150:H5 SE15 (commensal)
Pathway
ese03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ese00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECSF_2996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ese03019
]
ECSF_2996
03009 Ribosome biogenesis [BR:
ese03009
]
ECSF_2996
Enzymes [BR:
ese01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECSF_2996
Messenger RNA biogenesis [BR:
ese03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECSF_2996
Ribosome biogenesis [BR:
ese03009
]
Prokaryotic type
rRNA helicases
ECSF_2996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
BAI56536
LinkDB
All DBs
Position
complement(3266728..3268668)
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AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG
RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctgctgaatggc
cgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattctctttacct
ctgctgcagaatcttgatcctgagctgaaagcaccacagattctggtgctggcaccgacc
cgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacacatgcgcggc
gtaaacgtggttgccctgtacggcggccaacgttatgacgtgcaattacgcgccctgcgt
caggggccgcagatcgttgtcggtacaccgggccgtctgctggaccacctgaaacgtggc
actctggacctctctaaactgagcggtctggttctggatgaagctgacgaaatgctgcgc
atgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggtatgcgtaaaaacgaagcactggtacgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggcagaa
gctcttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaaccaggcgctg
cgtgagcagacactggaacgcctgaaagatggtcgtctggacatcctgattgcgaccgac
gttgcagcccgtggcctggacgttgagcgtatcagcctggtggttaactacgatatcccg
atggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcaggtcgtgctggt
cgtgcactgctgttcgttgagaaccgtgagcgtcgtctgctgcgcaacatcgaacgcacc
atgaagctgaccattccggaagtagaactgccgaacgcagaactgctgggcaaacgtcgt
ctggaaaaatttgccgctaaagtacagcagcagctggaaagcagcgatctggatcaatac
cgtgcactgctgagcaaaattcagccgactgccgaaggtgaagagctggatctcgaaact
ctggcagccgcactactgaaaatggcacagggtgaacgtactctgattgttccgccagat
gcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccgcgcgatcgt
aacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgcgaacgtcgtgatgtt
ggcgatatgcagttgtaccgtattgaagtgggccgcgatgatggtgttgaagttcgtcat
atcgttggcgcgattgctaacgaaggcgacatcagcagccgttacatcggtaacatcaag
ctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaagtgctgcaa
cactttacgcgtactcgcattctcaacaagccaatgaacatgcagttactgggcgatgca
cagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggcgaacgtcgt
gaaggcggtcgtaacttcagcggtgaacgccgtgaaggtggccgtggtgatgggcgtcgt
tttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgactctaccggtcgtcgt
cgtttcggtggtgatgcgtaa
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