Escherichia coli O150 H5 SE15 (commensal): ECSF_2998
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Entry
ECSF_2998 CDS
T02077
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ese
Escherichia coli O150:H5 SE15 (commensal)
Pathway
ese03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ese00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECSF_2998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ese03019
]
ECSF_2998
03016 Transfer RNA biogenesis [BR:
ese03016
]
ECSF_2998
Enzymes [BR:
ese01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ECSF_2998
Messenger RNA biogenesis [BR:
ese03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ECSF_2998
Transfer RNA biogenesis [BR:
ese03016
]
Prokaryotic type
tRNA degradation factors
ECSF_2998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
S1_RRP5
aRib
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
BAI56538
LinkDB
All DBs
Position
complement(3269790..3271994)
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AA seq
734 aa
AA seq
DB search
MRRRSGINTSTVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD
TAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDR
PIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI
NDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQ
NINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSET
IATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT
HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK
RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI
KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKE
IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR
ALTEETGTTIEIEDDGTVKIAATDGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGA
FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ
PAAAPEAPAAEQGE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagaagatcgggtattaacaccagtaccgtaaggtactgtctaagaaagagaaag
gatattacattgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgact
ctggaaaccggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgac
accgcggtatttgttaccgttgttggtcagaaaaaagccaaaccaggtcaggacttcttc
ccgctgaccgttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttc
ttccgtcgtgaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgc
ccgattcgcccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtg
gtttctgttaacccgcaggttaacccggatatcgtcgcgatgattggtgcttccgcagca
ctgtctctgtctggtattccgttcaatggcccgattggtgctgcccgtgtaggttacatc
aatgaccagtacgtactgaacccgactcaggacgaactgaaagagagcaaactggacctg
gttgttgccggtacagaagctgccgtgctgatggttgaatctgaagctgaactgctgagc
gaagaccaaatgctgggcgcagtggtgttcggtcatgaacaacagcaggttgttattcag
aacatcaatgaactggtgaaagaagccggtaaaccgcgttgggattggcagccggagccg
gtaaacgaagcgctgaacgcgcgcgttgctgcgctggctgaagctcgtctgagcgatgct
taccgcatcaccgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaacc
atcgcgacactgcttgctgaagacgaaaccctggacgaaaacgaactgggtgaaattctg
cacgctatcgagaaaaatgttgttcgtagccgcgtactggccggcgaaccgcgtatcgac
ggtcgtgaaaaagatatgatccgtggtctggatgtgcgtactggtgtgctgccgcgtact
cacggttctgcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaacgctgggt
actgctcgtgacgcgcaggttcttgatgaactgatgggcgaacgtaccgataccttcctg
ttccactacaacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtgctggcagtaatgccggat
atggacaaattcccgtacaccgtacgtgttgtgtctgaaatcaccgaatccaacggttcc
tcttctatggcttccgtgtgcggcgcgtctctggcgctgatggacgccggtgtgccgatc
aaagctgccgttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgta
ctgtctgacattttgggcgacgaagatcacctgggcgatatggacttcaaagttgcgggt
tctcgtgacggtatctctgcattgcagatggatatcaaaattgaaggtatcaccaaagag
atcatgcaggttgcactgaaccaggctaaaggtgcgcgtctgcatatcctgggcgtaatg
gaacaggcgatcaatgcgccgcgcggtgatatctctgagttcgctccgcgtatccatacc
atcaagatcaatccagacaagatcaaagacgttatcggtaaaggcggttctgtaatccgt
gctctgaccgaagaaactggcactaccatcgaaatcgaagatgacggtactgtgaagatc
gcagcgaccgacggcgagaaggcgaaaaacgctattcgtcgtatcgaagagatcactgca
gaaatcgaagtaggccgcgtctacaatggtaaagtgacccgaatcgttgactttggcgca
tttgttgccatcggcggcggtaaagaaggtctggtccacatctctcaaatcgctgataaa
cgcgttgagaaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagttctg
gaagttgatcgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaa
cctgctgcagcaccggaagctccggctgctgaacagggcgagtaa
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