Escherichia sp. F1: ACK8NJ_12985
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Entry
ACK8NJ_12985 CDS
T11101
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
esf Escherichia sp. F1
Pathway
esf02024
Quorum sensing
esf02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
esf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ACK8NJ_12985 (pdeR)
02026 Biofilm formation - Escherichia coli
ACK8NJ_12985 (pdeR)
Enzymes [BR:
esf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
ACK8NJ_12985 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
XMR19157
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All DBs
Position
2686319..2688304
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AA seq
661 aa
AA seq
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MKTVRESTTLYNFLGSHNPYWRLTEGSDVLRFSTTETTEPERTLQLSAEQAARIREMTVI
TSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEA
HSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSG
NAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTD
SITGLPNRNAMQELIDHAINQADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAI
LSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGI
SLSPEHGSDSAAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVV
RQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIEND
ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLV
RAIVAVAQALNLQVIAEGVESKKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKR
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccgttagggagtccacaacgttgtacaactttctcggatcgcacaatccatac
tggcggttaacggaaggcagcgatgttttgcgcttttctaccaccgaaaccacagaacct
gaacgtacgttgcagttatctgccgaacaggctgctcgcatcagggaaatgacggtcatc
acctccagcctgatgatgagtctgaccgtcgatgaaagcgatctttctgtgcatctggta
ggacgaaaaatcaataaacgggaatgggctggcaacgcgtctgcatggcatgacacacca
gcagttgctcgtgatttatcacacgggctttcctttgctgagcaggtagtttctgaagca
cattccgcaatagtgattctcgacagccgggggaatatccaacgcttcaatcggttatgt
gaagattacacagggttgaaagaacatgacgtcattgggcaaagcgtgtttaaactgttt
atgagccgtcgtgaagctgcggcatccaggcgcaataaccgtgtattttttcgaagcggc
aatgcatatgaagtcgaactgtggataccaacacgaaaaggccagcggctgtttctgttt
cgcaataaatttgtccacagcggcagtggcaagaacgagatttttttaatctgttccggc
accgacattaccgaagagcgccgcgctcaggagcgactgcgtattctggcaaataccgac
agtatcaccggactgccgaatcgtaacgcaatgcaggagttaatcgatcacgccattaat
caggcagataacaataaagttggggttgtgtatcttgatttggataattttaaaaaggtc
aacgacgcttatgggcatttgtttggtgaccagctattacgcgacgtgtcattggccatt
ttaagctgtctcgaacatgatcaggtgttggcgcgtccaggtggcgatgagtttttggta
ctcgcatccaatacctcacaaagcgcgctggaagcaatggcatcacgaattttgacccgc
ttacgactccccttccgcattggtttaattgaagtttataccagctgttcagtgggtatt
tcactctctcccgaacatggttcggacagcgcggctattattcgtcacgccgacacagca
atgtacacagcgaaggaaggcggacgaggacaattttgcgtttttaccccagaaatgaat
cagcgggtatttgaatatctctggctggataccaacttgcgtaaagcactggaaaacgat
cagttggttattcactatcaaccgaaaatcacctggcgtggcgaagtgcgcagtctggaa
gcactagtacgttggcagtcacctgaacgtgggttgattccaccgttggacttcatttcc
tacgccgaagagtcagggctaattgtgcctttaggccgttgggtgattctcgatgtcgta
cgccaggtggcaaagtggcgggataaaggtattaacctgcgagtggcggtaaacatttct
gcacgtcagctcgccgatcaaaccattttcaccgcccttaaacaggttctccaggaactc
aattttgaatactgccctattgatgttgaactgacggagagctgcctgattgagaatgat
gaactggcactttctgttattcaacaatttagccaactaggtgcgcaagtgcatctggac
gattttggtaccggctactcttcactttcgcaactggcgcgctttccgatcgatgcgatt
aaacttgaccaggtttttgttcgggatattcacaaacagcctgtatcgcagtcgctggtc
cgggcgatcgtcgctgtggcccaggcattgaatcttcaggtgatcgctgaaggagtggag
agtaaaaaggaagatgcttttttaaccaagaacgggatcaatgagcggcaaggatttttg
tttgccaaaccgatgcccgccgtcgccttcgaacgttggtataaacgctatctgaagcgc
gcataa
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