KEGG   Escherichia sp. F1: ACK8NJ_20920
Entry
ACK8NJ_20920      CDS       T11101                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
esf  Escherichia sp. F1
Pathway
esf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:esf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACK8NJ_20920 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:esf03019]
    ACK8NJ_20920 (rnr)
   03016 Transfer RNA biogenesis [BR:esf03016]
    ACK8NJ_20920 (rnr)
Enzymes [BR:esf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ACK8NJ_20920 (rnr)
Messenger RNA biogenesis [BR:esf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ACK8NJ_20920 (rnr)
Transfer RNA biogenesis [BR:esf03016]
 Prokaryotic type
  tRNA degradation factors
   ACK8NJ_20920 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 WHD_RNase_R RNase_II_C_S1 Rho_RNA_bind
Other DBs
NCBI-ProteinID: XMR20596
LinkDB
Position
complement(4360887..4363328)
AA seq 813 aa
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagt
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccagccgtgatgagctg
gcggtagaactgcacattgaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgc
gcgatggagcgcgatggtcaactggtcttcactcgtcgtcagtgctatgcgctgccggaa
cgcctcgacctggtgaaaggtaccgttattggccaccgtgatggctacggctttctgcgg
gttgaagggcgtaaagatgatttgtatctctccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggcgcagccgctgggtgctgaccgtaaaggtcgtcgtgaagcgcgt
attgtccgcgtactggtgccaaaaaccagccagattgttggtcgctactttaccgaagcg
ggcgtcggctttgtggttcctgacgacagtcgtttgagcttcgatatcttaatcccgccc
gatcagatcatgggcgcgcggatgggctttgtggtggtggttgaactgacccaacgcccg
actcgccgtaccaaagcggtgggtaaaatcgtcgaagtacttggcgacaatatgggcacc
ggcatggcggttgatatcgctctgcgtacccatgaaattccgtatatctggccgcaggcc
gttgagcaacaggttgccgggctgaaagaagaagtgccggaagaagcaaaagcgggccgt
gtcgatctgcgcgatttaccgcttgtcaccattgatggcgaagacgcccgtgactttgac
gatgcagtttactgcgagaaaaaacgcggcggcggctggcgtttatgggtcgcgattgcc
gacgtcagctactatgtgcgtccgccaacaccgctggacagagaagcgcgtaaccgtggt
acgtcggtgtacttcccttcgcaggttatcccgatgctgccggaagtgctctctaacggt
ctgtgttcgctcaacccgcaggtagaccgcctgtgtatggtgtgcgagatgacggtttcg
tcgaaaggccgcctgactggctacaaattctatgaagcggtaatgagctctcacgcacgt
ctgacctacaccaaagtctggcatattctgcagggcgatcaggatctgcgcgagcagtac
gccccgctggttaagcatctcgaagagttgcataacctctataaagtgctggataaagcc
cgtgaagaacgtggcgggatctcatttgagagcgaagaagcgaagttcattttcaacgcc
gaacgccgtattgaacgtatcgaacagacccagcgtaacgacgcacacaaattaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaagccaaagaaccg
gcactgttccgtattcacgacaagccgagcaccgaagcaattacctctttccgttcagtg
ctggcggagctggggctggaattgccgggcggtaacaagccggaaccgcgtgactacgcg
gagctgctggagtcggttgccgatcgtcctgacgcagaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccagaaaaccgtggtcacttcggtctggcattg
cagtcctatgcgcacttcacttcgccgattcgtcgttatcctgacctgacgctgcaccgc
gccattaagtatctgctggcgaaagagcaggggcatcagggcaacactactgaaaccggc
ggttaccattattcgatggaagagatgttgcaactgggtcagcactgttcgatggcggaa
cgtcgtgccgacgaagcaacacgcgatgtagctgactggctgaagtgtgacttcatgctc
gaccaggtaggtaacgtctttaaaggcgtaatttccagcgtcactggctttggcttcttc
gtccgtctggacgacttgttcattgatggtctggtccatgtctcttcgctggacaatgac
tactatcgctttgaccaggtagggcaacgcctgatgggtgaatccagcggccagacttat
cgcctgggcgatcgcgtggaagttcgcgtcgaagcggttaatatggacgagcgtaaaatt
gactttagcctgatctccagcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgag
aaagcgaaaaaaggcgatgcaggtaaaaaaggcggcaagcgtcgtcaggtcggtaaaaag
gtaaactttgagccagacagcgccttccgcggtgagaaaaaaacgaagccgaaagcggcg
aagaaagacgcgagaaaagcgaaaaagccatcggcgaaaacgcagaaaatagctgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga

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