Enterococcus saigonensis: EsVE80_02570
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Entry
EsVE80_02570 CDS
T06615
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
esg
Enterococcus saigonensis
Pathway
esg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
esg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EsVE80_02570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
esg03400
]
EsVE80_02570 (mfd)
Enzymes [BR:
esg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EsVE80_02570 (mfd)
DNA repair and recombination proteins [BR:
esg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EsVE80_02570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_7
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCA84734
UniProt:
A0A679ILQ2
LinkDB
All DBs
Position
293482..297021
Genome browser
AA seq
1179 aa
AA seq
DB search
MDLLGLFDKVPQIGQWQEQLAKKSKRQLLTGLAGSAKTLALVSTLQKLQKSILVITPNLY
YTNQLVEDLRNLTDAVFAFPVDEVLSAEMAFASPEAKAERVQTLNAIAQNELGIYVMPVA
ALRKYLPTPETWRNYQLHWQIGDELDLATLPTQLVLMGYQRESMIAKPGEFSIRGSIIDI
YPLHAEYPVRVELFDVEIDSMRYFDVETQRSLGNVDHVLVSPTSELVFTAAELETGAKNL
KSALEKRLAVTKEKTDKEFLSEYFGQVQNEWLNGIPGENINFYLDFLYEVPTTIVDYFAK
DTLLMVDDYPRIMETNREIEREEGEWQVQKISELRVFSEQKFGVDVHQFFQKETFTTSFF
ALFQKGMGNLRFGAIWNFQYRPMQQFFSQMGLLKAELDRWEKQQQTVIFLVADDERAKKL
DHNFRDHEIYAPVTKADTLITARSQIVVGNLQSGFEMPQDRFVVVTEKEIFQKVKRKRAR
RQTITNAERLKSYNELKPGDYVVHANHGIGKYIGMETLEVDGVHQDYITILYQNDDKLFI
PVTQLNLIQKYVASESKTPKINKLGGSEWSKTKRKVSGKIEDIADDLIALYAKREAEKGF
AFAADDGYQKQFEDAFPYTETDDQLRSAAEIKHDMEKPKPMDRLLVGDVGFGKTEVALRA
AFKSIKESKQVAFLVPTTILAQQHYETMLDRFEGFPVNIGLLSRFRTKKQQAETLEQIRT
GQVDIVVGTHRLLSQDVKFSDLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPENRYPIQTYVMEKNPGAIREAIHRELARDGQVFYLYNRVET
IEKKVDELQALVPEARIGYAHGQMTEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNVN
TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEPQKILNEVSEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLEEAVARKQGKNIQSQKTSVEID
LGIDAYLPGTYIIDERQKIEIYKRIRELENEEQLDELQDDLLDRFGEYPDEVAHLLTIGQ
IKMDGDRALLESIRKMNHQIKVTLSKVGTKTYTVEQLFEALSVTKMKAAMAVNNEKMTIT
LTIVPKMSQAVWLHEIQEFIKALREEKYKNAIVTEDKID
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcttggtttatttgataaagtgccgcaaatcggtcaatggcaagagcaatta
gcaaaaaaaagtaagcgacagttattaaccggcctcgctgggtcagccaaaactttggca
ttagtcagtactttacaaaaattgcaaaagtcaattttagtcattaccccaaatttgtat
tacactaatcaattagtagaagatttacgaaatttaacggatgcagtttttgcttttccg
gtagatgaagttttatcagcagaaatggctttcgcttccccagaagcaaaagccgaacga
gttcaaaccttaaatgccatcgcgcaaaatgaattgggaatttacgttatgccagtggcg
gctttgagaaagtacttgcccacgcctgaaacatggcgaaattatcaattgcattggcaa
attggtgatgaattagatttggctactttaccaacgcaattggtgttgatggggtatcaa
cgtgagagcatgattgcaaagcccggtgaatttagtattcgtggtagcatcattgatatt
tatcctttacatgcagaatatcccgtgcgggtggaactatttgatgttgaaattgattcc
atgcgctattttgacgtggaaacacaacgttcactaggaaatgttgatcacgttttagtc
agtccgacaagtgagttggtttttactgctgctgagttagagacgggggcaaaaaattta
aaatcagctttagaaaaacgtttagcagtcaccaaagaaaaaacggataaagaattttta
agtgaatattttggtcaggtgcaaaacgaatggctaaatggcataccgggagaaaatatc
aatttttatctcgattttctttatgaggtgccaacgacaattgtagactattttgccaaa
gatacccttttaatggtagacgattatccgcgaattatggaaacaaatcgtgaaatcgaa
cgtgaagaaggagagtggcaagttcaaaaaatcagtgaactacgtgttttcagtgagcaa
aaatttggagtagatgtgcatcagtttttccagaaagaaacatttacgactagctttttt
gcactgtttcaaaagggaatgggaaatttgcgttttggcgcaatttggaactttcaatat
cgtcctatgcagcaatttttcagtcaaatggggttgttaaaagctgaattagatcgttgg
gaaaaacagcaacagacagtgatatttttagttgccgatgatgagcgcgcaaaaaaactt
gatcataatttccgcgaccatgaaatttatgctcctgtgactaaagccgatacgttaatt
accgctcgtagccaaattgtggtaggaaatttgcaaagcggttttgaaatgccacaagat
cgcttcgtagtcgtcacagaaaaagaaatctttcaaaaagtaaaacgaaaacgtgcacga
cgccaaacgattactaatgcggaacggctaaaaagctataatgagttaaaacctggcgat
tatgtcgttcacgccaatcacgggattgggaaatatatcggtatggagacattggaagta
gacggtgtccatcaagattacatcacaattttatatcaaaatgatgacaaattatttatt
ccggtaacccagctaaacttaattcaaaaatatgtcgcttcagaatctaaaacgcctaaa
attaataaactcggtggtagcgagtggagtaaaacaaaacgaaaagtctctggtaaaatt
gaagatattgcggatgacttaattgcgctatacgccaaaagagaagcagaaaaaggattt
gcctttgcggcagatgatggttatcaaaaacaatttgaggatgctttcccctatacagaa
acagatgaccagcttcgaagtgcggctgaaattaagcacgatatggaaaaaccaaaacct
atggatcggctgttagtaggtgatgttgggtttggaaaaacagaagtcgcgttacgggct
gcttttaaatctattaaggaaagtaagcaagttgcttttttagtgccaacaacaattttg
gcacaacagcattacgaaacaatgttggatcgttttgagggttttcctgttaatattggc
ttactcagtcgttttcggacgaaaaaacaacaggcggaaacgctggaacaaattcgtaca
gggcaagtggatatcgtggtaggaacccaccgcttattatcacaagacgtgaagttttcg
gatttgggattgttggtaattgatgaagaacaacgctttggcgtaaagcataaagaacgt
ttaaaacaacttcggtcacaagtggatgtcctaactttgacagcgacgccaattcctcgg
acgttacacatgtctatgcttggtgtgcgagatttatctgtaattgaaacaccgccggaa
aatcggtatcctattcaaacctatgtaatggaaaaaaatccaggtgccattcgcgaagca
atccatcgagaattggctcgtgacggacaagttttctatttgtacaatcgtgtcgaaacc
attgagaaaaaagttgatgaattacaagctttagtaccagaagctcgtatcggttatgcc
cacggtcaaatgacagaaatccaattggagaatacgttgttagacttcattgaagggcag
tatgacattttagtcaccacaacgattattgaaaccggtgtggatattcccaatgttaat
acattgtttgtggaaaatgcagattatatgggattatctactttgtatcagttaagaggt
cgtgtgggtcgaagtaaccgcgtagcctatgcgtatttcatgtatgaaccacaaaagatt
ttaaatgaagtgagcgagaaacgactacaggccattaaagattttacggaacttggatct
ggttttaaaattgcgatgcgggatttatctattcgtggtgctgggaacctattaggtgcg
cagcaacatgggttcattgacgcagttggttttgatatgtattcccaaatgttagaagaa
gcagttgcccgcaaacaaggaaaaaatattcaaagtcaaaaaacttcagtggaaattgat
ttaggtattgatgcgtatttaccaggtacttatatcatagatgaacggcaaaaaatagaa
atttacaaacgtattcgagaattggaaaatgaagaacaactagatgagttgcaagatgat
ttattggatcgttttggagagtatcctgatgaagtagctcatttattgacaattggacaa
attaaaatggatggagatcgagcattactagaaagtatccgtaagatgaatcaccaaatc
aaagttactttaagtaaagtgggaactaaaacttatacagtcgaacaattatttgaagct
ttgtctgtaacaaaaatgaaagcagcaatggcagttaataatgaaaaaatgacaattacg
ttaacgattgtacctaaaatgtcgcaggccgtctggcttcatgaaatacaagaatttatt
aaagcattgcgagaagaaaaatataaaaatgctattgtaactgaagataaaatagattag
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