Enterococcus saigonensis: EsVE80_17020
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Entry
EsVE80_17020 CDS
T06615
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
esg
Enterococcus saigonensis
Pathway
esg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EsVE80_17020 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esg03019
]
EsVE80_17020 (rnr)
03016 Transfer RNA biogenesis [BR:
esg03016
]
EsVE80_17020 (rnr)
Enzymes [BR:
esg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EsVE80_17020 (rnr)
Messenger RNA biogenesis [BR:
esg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EsVE80_17020 (rnr)
Transfer RNA biogenesis [BR:
esg03016
]
Prokaryotic type
tRNA degradation factors
EsVE80_17020 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BCA86179
UniProt:
A0A679ID62
LinkDB
All DBs
Position
complement(1837907..1840279)
Genome browser
AA seq
790 aa
AA seq
DB search
MKATIKEQVLTFLATSNKKSFSAEEIAEGLNLQKSTDFKLLVQTIAAMEREGTIIFNKKG
KIKLPPQTVLVEGTFRANERGFGFVTIDPEEDDIFIPKEKTGYAMDGDTVAIDIVKISDP
FSDRGAEGQVVEIRQRAVNQIVGEFSLFDESEIAESDLYGSVKPKDKNFNGLRVLVAAQG
IKPVDGSIVIVEITHYPEKGYPTSIEGVVKQIIGHKNDPGMDILSIVISHGINTSFPANV
LAQADKVAETIDPADFPDRVDRRDQLIVTIDGEDAKDLDDAVTVKKLTNGNFFLGVHIAD
VSYYVTEGSPLDQEAYDRGTSVYLTDRVIPMIPQRLSNGICSLNPHVPRLTMSCEMEIDP
TGNIVKHAIFPSIIQTTERMTYTAVNAIIEDEEPEVSKRYEKLVPMFYEMAELHYILEQR
RIKRGAVSFEDREAKVLVDEQGHPKDIILRSRGIGERLIESFMLAANETVAEHYNKLQLP
FIYRIHEDPKEEKLQRFFDFAAALGMVVKHTKGSITPKDLQKVVADVAERPEAMVVNMML
LRSMQQAKYSEHNAGHYGLAADYYTHFTSPIRRYPDLIVHRLIRSYASDTSKKMQSKWQE
KLPEIAHHSSDMERRAVLCEREVDAMKKAEFMQEHIGEDFDGVISSITKFGIFIELPNTI
EGMIHISNLKEDYFHFVEQQLALVGERTGMTFKIGQKVRVKVTNANPETREIDFELVSAE
EVTQLPRPQVSRNNRSGKKTDNRSSRRQKHTPAKSKAYDNKGKLQVDLNGNKKKKGKKPF
YKGIKKKKHK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcaacaattaaagagcaggttttaacttttttagctacgagtaataaaaaaagt
ttttctgccgaagaaattgcagaaggtttaaatctgcaaaaaagtactgattttaagctg
ctggtacagacaatagcggcaatggagcgagaaggtacgattatttttaacaaaaaaggc
aaaattaagttgccaccacaaacagtattagtagagggtacatttcgtgctaacgaacga
ggttttggttttgtaaccatcgatccagaagaagatgatatttttattcccaaggaaaaa
acgggctatgctatggatggtgatacggttgccattgatatcgtgaaaatttcagatcct
ttttctgatcgtggtgcagaaggtcaggttgtagaaattagacaacgagctgtcaatcaa
atcgtgggtgaatttagtttatttgatgaaagtgaaatcgccgaaagcgatttatatggg
agtgtgaaaccaaaagataagaattttaatggcttaagagttttagttgctgcacaagga
attaagccagtggacggtagtattgtcattgtagagattacccattaccctgaaaaaggc
tatcctactagtattgaaggtgtagtcaaacaaattattggacataaaaatgatcctggc
atggatattttatctatcgttattagtcatggtattaacacgagttttcctgcaaatgtt
ttagctcaagcagacaaagtagcagagacgatagacccagctgattttcctgatcgtgtg
gatcgtcgagatcaattgattgtaacgattgatggcgaagatgccaaagacttagatgat
gcggtcactgtaaaaaaattaacaaatggtaattttttcttgggtgtgcatattgcagat
gtttcatattatgtaacagaaggtagccctttagaccaagaagcttatgatagaggtacg
agtgtctatttgacagatcgcgttattccgatgattccacaacgtctatcaaatggtatt
tgctccttgaatcctcacgtgccccgtcttactatgagctgtgaaatggagattgaccca
actggaaatattgtcaagcatgctatttttccaagtataattcaaactaccgaacggatg
acatatacagcggtaaatgcgattattgaagatgaagaaccagaagtctccaagcgctat
gaaaaattagtaccgatgttttatgaaatggcagaattacattatattctggaacaacgc
cggataaaaagaggagcagtcagctttgaagatcgtgaagcgaaagttttagttgatgag
cagggccaccctaaagatattattttgcgcagccgtggtataggagaacgtctaattgaa
tccttcatgttagcagccaatgaaacggtggcagaacattacaataaattacaattacct
tttatttatcgaattcatgaagatccaaaagaagaaaaattgcaacgtttttttgatttt
gcagctgctttgggtatggtagtaaaacatacgaaaggaagcatcacccccaaagattta
caaaaggttgtggccgatgtcgcagagcgaccagaagcgatggttgtcaatatgatgttg
ttacgtagtatgcagcaggcaaaatattctgaacataatgccggacactatggcttggcc
gctgattattatacacactttacttcaccgataagacgatacccagatttaatcgttcat
cgccttattcgcagttatgcaagtgatacaagcaaaaaaatgcaaagcaaatggcaagaa
aagctgccagaaattgcgcatcattcttctgatatggaacgtcgtgctgttttgtgcgaa
cgggaagttgacgccatgaaaaaagcagaatttatgcaagaacatattggtgaagatttt
gatggagttatcagctcaattacgaaatttggtattttcattgaattaccaaatacaatt
gaaggtatgattcacattagtaatttaaaagaggactattttcactttgttgagcaacaa
ttagctcttgttggtgaaagaacaggaatgacttttaaaattggacaaaaagtccgtgtg
aaagtaactaatgctaatcctgaaacaagagaaattgactttgaattggtctcagcagaa
gaagttacccaattacctcgaccacaagtgagtcgtaacaatcgtagtggcaaaaaaaca
gataatcgttccagtcgccgtcagaaacatacgccagctaaatcaaaggcgtatgataat
aaaggtaaattgcaagttgatcttaatggtaataagaagaaaaaagggaaaaaacctttt
tataaaggtataaaaaagaaaaaacataaataa
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