Enterococcus saigonensis: EsVE80_20820
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Entry
EsVE80_20820 CDS
T06615
Symbol
srmB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
esg
Enterococcus saigonensis
Pathway
esg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EsVE80_20820 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esg03019
]
EsVE80_20820 (srmB)
03009 Ribosome biogenesis [BR:
esg03009
]
EsVE80_20820 (srmB)
Enzymes [BR:
esg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EsVE80_20820 (srmB)
Messenger RNA biogenesis [BR:
esg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EsVE80_20820 (srmB)
Ribosome biogenesis [BR:
esg03009
]
Prokaryotic type
rRNA helicases
EsVE80_20820 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCA86559
UniProt:
A0A679IE14
LinkDB
All DBs
Position
complement(2243892..2245430)
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AA seq
512 aa
AA seq
DB search
MKFNELNLSPELLQSVERAGFEEATPIQEATIPLALAGRDVIGQAQTGTGKTAAFGLPML
EKIDTNNHTLQGLVIAPTRELAIQTQEELYRLGRDKKIRVQAVYGGADIGRQIRGLKDRP
HIVVGTPGRMLDHINRHTLKLGTVRTLVLDEADEMLNMGFLEDIEKIISQVPEERQTLLF
SATMPPAIKSIGVKFMKNPEHVQIKAKEMTADLIDQYYVRAKDFEKFDVMTRLLDVQTPE
LAIVFGRTKRRVDELARGLETRGYRAEGIHGDLSQQKRMSVLRAFKSGQLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVIENLTKK
RMSPLRPPTEKEAFKGQLGAAVQQVEDGLKENGLERYMTTAEKLIEGYDPEVLVALLLKT
LAKDPADAIPVKITPERPLPSGKKGFNKNNRRGGGGNNRKEGGNYRNKNKNSHYNKEGQK
RNDRRRDDRRRDDRRQNDGGGKRSFVIRNNQD
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaacgaacttaatttatcacctgaattattgcaatctgtcgaacgggccggc
tttgaagaagcaaccccaatccaagaagcaacaattcctttagcactagcaggtcgcgat
gtaatcggtcaagcacaaactggtactggtaaaacagcagcgtttggtctaccaatgtta
gaaaaaattgatactaacaatcataccttgcaaggacttgttattgcaccaacacgtgaa
cttgcgattcaaacacaagaagaattgtatcgtctaggacgtgacaaaaaaattcgcgtg
caagctgtttatggtggtgcagatattggccgtcaaattcgcggcttaaaagatcgtccc
catattgttgttgggacacctggtcgaatgcttgaccatattaaccgtcacacattgaaa
ttaggaactgttcggacattagtcttagacgaagccgacgaaatgttgaacatgggcttt
ttagaagatattgaaaaaattatctcccaagttccagaagaacgccaaacattactattt
tctgctacgatgcccccagctattaaaagtattggcgtaaaatttatgaaaaatcctgaa
catgttcaaattaaagctaaagaaatgacggctgatttaattgatcaatattatgttcgg
gcaaaagattttgaaaaatttgatgtaatgacgcgcttattagatgttcaaacaccagaa
cttgcgattgtttttggtcgaacaaaacgtcgtgtagatgaattagcccgtggtttagaa
acccgtggttatcgtgcagaaggtattcatggtgacttgtcacaacaaaaacgaatgagc
gtactacgtgcttttaaatcaggtcaattagacattttagtcgctactgacgttgctgct
cgtggtttggatatttctggtgtaacacacgtctacaattacgatattccacaagatcca
gaaagctatgttcaccgtattggtcgtactggtcgtgccggcaaaggcgggatgtctgta
acttttgtaacaccaaatgaaatgagttatttgcacgttattgaaaacttaacgaaaaaa
cgcatgtcaccattacgtccaccaaccgaaaaagaagcgttcaaaggacaactaggtgct
gcagtccaacaagttgaagatggcttaaaagaaaacggtttggaacggtatatgactacg
gctgaaaaattaattgaaggctatgatccagaagttttagttgcattgttactaaaaact
cttgcaaaagatccagccgatgctattccagttaaaattaccccagaacgtccgctacca
agtggtaaaaaaggatttaataaaaataatcgtcgtggtggcggtggtaataaccgcaaa
gaaggcggaaattaccgcaataaaaataaaaacagtcactacaataaagaaggccaaaaa
cgtaacgatcgtcgtcgcgatgaccgtcgccgtgatgaccgtcgtcaaaatgatggcggc
ggcaaacgcagttttgttattcgtaataaccaagattaa
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