Exiguobacterium sibiricum: Exig_0089
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Entry
Exig_0089 CDS
T00687
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
esi
Exiguobacterium sibiricum
Pathway
esi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
esi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Exig_0089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esi03021
]
Exig_0089
03400 DNA repair and recombination proteins [BR:
esi03400
]
Exig_0089
Enzymes [BR:
esi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Exig_0089
Transcription machinery [BR:
esi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Exig_0089
DNA repair and recombination proteins [BR:
esi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Exig_0089
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACB59576
UniProt:
B1YGU3
LinkDB
All DBs
Position
115886..119485
Genome browser
AA seq
1199 aa
AA seq
DB search
MVDVNRFEYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
YCGKYKRIRYKGIICDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVTDPGESTLEKKQLLSEKEYRAYREKFGSSFTAEMGAEAVRKLLR
DVELEKEVAGLREDLRMIQGQRRTRAIKRLEVLDAFRNSGNNPEWMVLEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVSRGIAPNIKSAKRKIERVQPEIWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERENAIGEGKIFSTVNEALIAYQNGYVHFHTRVAIP
AGVLKNPTFTEAQNEKLLVTTVGKLIFNEILPTTFPYLNEPSMNNLQEATPDQYFLEKGT
DIAAEIKSRPIIEPFKKGFLGNVIAEVFKRFETTETSRMLDRMKNLGFKHSTRAGITVGI
ADIIVLPDKQEILVEAQDNVDRVMKSYRRGLITEEERYERVVKSWNDAKDEIQSRLMKSL
NRLNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGRIIELPIKSSFREGLTVQEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGIRVTALREGTEEIENLY
DRLVGRTAFEKVVHPETGAVLVSTNELIDEDIARAITDAGIDNVEIRTAFTCNTSHGVCK
KCYGRNLATGNDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIDGQVIDFTESRDKRELTIQGLSETRTYTIPFGSRLRVQLGEEVKAG
QVFTEGSIDPKELLNVKGVSGVQNYLLQEVQKVYRMQGVEIGDKHVEVMVRQMIRRVRVI
ESGETSLLPGSLVDISTFKEACKEALRAGKALASAKPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKSDYLRGLKENVIIGKLVPAGTGMTRYRQIGLEIAGEAPVEADSPVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgttaatagatttgaatatatgaaaatcggcctcgcttcccctgaaaagatc
cgttcgtggtctttcggggaagtgaagaagccggaaacgatcaactatcgtacgctcaag
ccagagaaagacggcttgttctgtgaacggatttttggtccgaccaaagactgggaatgt
tactgcggaaaatacaaacggatccgttataaaggaatcatttgtgaccgttgtggcgtt
gaagtaacgaagtcgaaagtccgtcgtgagcgcatgggtcacattgaacttgcagcaccg
gtttcgcacatctggtactttaaaggaatcccaagtcgtatgggtctcgtccttgatatg
tcaccgcgcgcactcgaagagatcatctacttcgcgtcgtacgtcgtgacagatccgggc
gaatcgacactcgagaaaaaacaacttctttcagaaaaagagtaccgcgcttaccgcgag
aaattcggtagttcgtttaccgctgaaatgggtgcggaagctgttcgtaaattgctccgt
gacgttgaactcgaaaaagaagtagccggtttacgtgaagatcttcgaatgattcaagga
caacgtcgtacacgtgcgatcaaacgtcttgaagtcctcgatgctttccgtaactcaggc
aacaacccggagtggatggttctggaagtacttcctgtcatcccgccggaactccgtccg
atggtccagcttgatggtggacgtttcgcgacatctgacttaaacgacttataccgtcgt
gtcatcaaccgtaacaaccgtctcaagcgtcttcttgaccttggcgctccgaacatcatc
gttcagaacgaaaaacggatgttgcaagaagcggtcgatgccttgatcgataacggtcgt
cgcggtcgtccggttactggaccgggtaaccgtccattgaaatctctttcgcacatgctg
aaagggaaacaaggacgtttccgtcaaaacttactcggtaaacgagtcgactattctggt
cgttcggttatcgtcgttggtccaaacctgaagatgtatcaatgtggtcttccgaaagaa
atggcccttgaactcttcaaaccgtttgtcatgaaagagcttgtctcacgtggcatcgca
ccgaacatcaagagtgcaaaacggaaaatcgaacgtgttcaacctgaaatttgggacgta
ttagaagaagtcatccgtgagcacccggttctcttgaaccgtgccccgacgcttcaccgt
ctcggtatccaggcgttcgaaccgacactcgtcgaaggtcgcgcgattcgccttcacccg
ctcgtatgtacggcttacaacgccgatttcgatggtgaccaaatggcggttcacgtacca
ctttcagcagaagcacaagcagaagcacgtcttctcatgctcgctgcacaaaacatcttg
aacccgaaagacggtaagcctgttgttacaccatcgcaggatatggtcctcggtaattac
tacctgacgcttgaacgtgaaaacgcaatcggcgaagggaaaatcttctcgacggtgaac
gaagcgttgattgcctaccaaaatgggtatgtccacttccacacacgtgttgcgattcca
gccggcgttctgaagaacccgacattcacggaagcacaaaacgagaaattattggttacg
acggtcggtaagttgattttcaacgagatcctcccaacgacgttcccatacttgaatgaa
ccatcgatgaacaatctgcaggaagcaacgcctgatcagtacttccttgaaaaaggaacg
gacatcgcggctgaaatcaagagccgtccgatcatcgagccattcaaaaaaggattcctc
ggaaatgtcatcgcggaagtcttcaagcgttttgaaacgactgaaacaagccgcatgctt
gaccgaatgaaaaaccttggtttcaaacactcgacacgtgcgggtattacggttggtatc
gctgatatcatcgtacttccggataaacaggaaatcctggtcgaggcacaagataatgtt
gaccgcgttatgaaatcgtaccgtcgtggtctcatcacggaagaagagcgctatgagcgt
gtcgttaaatcgtggaatgacgcgaaggatgaaattcagtctcgtctgatgaaatccctc
aaccgtttgaacccgatcttcatgatgagtgactccggtgcccgtggtaacgcgtcaaac
tttacgcagcttgcagggatgcgtggactcatggccgctccaagtggacggatcatcgag
ctcccgatcaaatcatcgttccgtgagggtctgacggttcaggaatacttcatctcgacg
cacggtgcccgtaaaggtcttgccgatacagccttgaagactgccgattcaggttacctg
actcgtcgtctcgttgacgtcgcgcaagatgttatcattcgtgaagatgattgtggtacg
gatcgtggtatccgcgtcacagcactccgcgaaggaacggaagaaatcgaaaacctctac
gaccgccttgtcggccgtacggcgttcgaaaaagtcgttcacccggaaacaggagcagtc
ctcgtttcaacaaacgaactcatcgacgaagatatcgcgcgtgcgattaccgacgcaggc
atcgacaacgttgagattcgtacagccttcacttgtaatacaagtcacggcgtctgtaag
aaatgttacggacgtaaccttgcgactggtaacgacgtcgaagtcggcgaagcagtcgga
atcatcgcggcacaatcaatcggtgagccaggaacgcagcttacaatgcgtaccttccac
acaggtggggttgccggagacgatatcacacaaggtctcccgcgtatccaggagttgttc
gaggcccgtaacccgaaaggtcaagcggtcatctcggaaatcgatggacaagtcatcgac
tttacagagtcgcgtgataagcgtgagttgacgattcaaggtctgagcgaaacacggaca
tacacgattcctttcggatcacgtcttcgtgttcaactcggtgaagaagtcaaagccgga
caagtgttcacggaaggttcaatcgacccgaaagaactcttgaacgtcaaaggtgtatca
ggcgtacagaactatcttcttcaagaagttcaaaaagtataccggatgcaaggggttgag
atcggtgacaagcacgtcgaggtcatggtacgtcagatgatccgtcgcgtccgcgtcatc
gagtctggtgagacatcactcttaccaggttcgctagtcgatatcagcacattcaaagaa
gcatgtaaagaagcgctccgtgccggtaaagcactcgcttcggctaaaccagttctcctc
ggtattacaaaagcgtcgcttgagacggattcgttcctatcagctgcttcgttccaggaa
actactcgtgtccttacggatgcggcgattaaagggaagagcgactaccttcgcggcttg
aaagagaacgttattatcggtaaacttgttccagctggtacaggaatgacacgttaccgt
caaatcggtctcgagatcgcaggcgaagcacctgtagaagcagattctcctgtagaataa
DBGET
integrated database retrieval system
