Exiguobacterium sibiricum: Exig_0618
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Entry
Exig_0618 CDS
T00687
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
esi
Exiguobacterium sibiricum
Pathway
esi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Exig_0618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esi03019
]
Exig_0618
03009 Ribosome biogenesis [BR:
esi03009
]
Exig_0618
Enzymes [BR:
esi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Exig_0618
Messenger RNA biogenesis [BR:
esi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Exig_0618
Ribosome biogenesis [BR:
esi03009
]
Prokaryotic type
rRNA helicases
Exig_0618
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
DD_DDX21-DDX50
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACB60099
UniProt:
B1YK18
LinkDB
All DBs
Position
653372..654964
Genome browser
AA seq
530 aa
AA seq
DB search
MTTFRELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPT
IERLDAKSRYIQALILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRKN
PQIVVATPGRLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPPTRQTLL
FSATMPPQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKESQKFDVLCRLIDTDSP
ELSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATDVA
ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTIERVTN
KKMSRRHAPTLDEILEGNLKLAAQELIKRVEAKNSQEYTTLAQELLEEYEAVELIAAALK
GLTKEPDATPVQISSIEPIRVKRFGSNGGGGNRRPYGNKGGSGSGSSSNRGGGYRGSNPR
GGERREGGRPSEGNRSSSSASSDRREGGYAGRNRSESDRNRGGRKPRFEK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacatttcgtgaattaaatcttagtgaggcacttatcaaaggtgtcctaaaaatg
ggctttgaagaagcaactccaatccaagcagaaacaattccagtcggtcttagcggcgtt
gacttaatcggtcaagcacaaacaggaacagggaaaacagctgcattcggtattccaacg
attgagcgtcttgacgcaaaatcacgttatatccaagcattgatccttgcaccgactcgt
gagcttgcgattcaagtagcagaagaacttaaccgcattggtgaagtaaaacgtgttcat
gcattgccagtatacggtggtcagcaaatcgaccgtcagattcgtgcgcttcgtaagaac
ccacaaatcgtcgtcgctacacctggtcgtctaatggaccacatgaaccgtaaaacatta
aaccttgaccacgtccaaacagttatcttggatgaggcagatgaaatgttgaacatgggc
ttcgtggaagatatcgaaaaaatcttgggtacacttccgccaactcgccaaacactttta
ttctctgcgacaatgccgccgcagattcgtaaaatcgcagatcgtttcatgacgactccg
actcacatcaaagtaaaagcaaaagaaatgactgtcgaaaacatcgaccaatcattcatc
gaattaaaagaaagccaaaaattcgacgtcctttgccgcttgattgatacggattctccg
gaactctcgatcatcttcggtcgtacgaaaaaacgtgtcgatgagatgacagaaggtcta
atccaacgtggttatacagctgacggcttacacggtgacttaacacaagcaaaacgtgac
caagtcatccgtcgcttcaaaaaaggaacaatcgatatccttgttgcaactgacgtagcg
gcacgtggacttgatatttcaggcgttacacacgtctacaacttcgacgtcccgcaagat
ccggagagctatgttcaccgtatcggtcgtacaggtcgtgctggtaaaacaggatcagca
atcacattcgttacaccacgtgagtttggtcaaatcaaaacaatcgaacgtgtaacaaac
aaaaaaatgtcacgtcgtcatgcaccgacgcttgacgaaatcttggaaggcaacttgaaa
cttgctgcacaagagttgatcaaacgtgtagaagcgaaaaactcacaagagtatacaaca
ctcgctcaagaacttcttgaagagtatgaagcggttgaattaatcgcagcagcgcttaaa
ggattaacgaaagagccggatgcaacgccagttcaaatttcgtcaatcgaaccaatccgt
gttaaacgttttggcagcaacggtggcggtggtaaccgtcgtccttacggcaacaaaggt
ggatcaggttctggttcttcttctaaccgtggtggcggataccgtggcagcaacccacgt
ggtggggagcgccgtgaaggcggtcgtccttctgaaggaaaccgtagttcttcatcagcg
tcatcagatcgccgtgaaggtggatacgctggccgtaaccgcagtgaaagtgatcgcaac
cgtggtggacgtaaaccacgttttgaaaagtaa
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