Exiguobacterium sibiricum: Exig_2973
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Entry
Exig_2973 CDS
T00687
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
esi
Exiguobacterium sibiricum
Pathway
esi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Exig_2973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esi03019
]
Exig_2973
03009 Ribosome biogenesis [BR:
esi03009
]
Exig_2973
Enzymes [BR:
esi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Exig_2973
Messenger RNA biogenesis [BR:
esi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Exig_2973
Ribosome biogenesis [BR:
esi03009
]
Prokaryotic type
rRNA helicases
Exig_2973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AppA_4HB
Motif
Other DBs
NCBI-ProteinID:
ACB62419
UniProt:
B1YG35
LinkDB
All DBs
Position
complement(2956802..2958247)
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AA seq
481 aa
AA seq
DB search
MSKKPFTDFQLSTPILEAIEQLGYHTPTDVQQAVIPVALSEKDIIVKSRTGSGKTASFGI
PLCELVEWEENKPQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELK
QKTHIVVGTPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRTT
MLFSATFPQDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVTDKTKFAVLKDVTVVE
NPDRCMIFCRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLVATD
VAARGIDIENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVEQY
RGEAIERRQAPTERELIRTADAFEEKITTADVRASKTEQLNADIMKLYFNGGKKKKLRAV
DFVGTIAKIEGMTAQDIGIITIQDTVTYVEILNGKGPLVLRAMKTTKVKGKQLKVYEAFK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaaccattcactgattttcaactcagtacgccgattctagaagcgattgaa
cagctcggttatcatacgccgaccgatgtccaacaagcagtcattccggtcgctttatcg
gaaaaagatatcatcgtcaaatcacggaccggcagcgggaagacggcatcgttcggaatt
cccctttgcgaactcgttgagtgggaagaaaacaaaccccaggcgttaattttaacacca
acgcgtgagctggccctgcaagtcacggaagatgtcatgaacatcggtcgttataaacga
atcaaagcgacagctgtgtttgggaaacaaccattccgcggacaagtcgcagaactgaaa
cagaagacacatatcgtcgtcgggacaccgggtcgtgtgctcgatcacttggagcgcggc
acgttatcacttgaaaaagtgaaatacctggttcttgacgaggcggacgagatgctcaac
atgggcttcctcgatcaagtggatacgattttaaaacaattgccgaaacaacggacgacg
atgctgttctcagcgacgttcccgcaagatattcatcagttgagcgaccgttacatgcag
tcaccgaaacaagttgaaatcacgacgaaggcaacggaaatcgcagaaatcgaacacagc
tatatcaaggtcacggataaaacgaagtttgctgtcctcaaagacgttactgtcgttgaa
aacccggaccggtgcatgattttctgccggacaaaagaacatgttgatttcgtcgcccaa
ggactggcatcgatggattatccggttgaaaaaattcacggtggaatggaacaggacgag
cgtctcgccgtcatgaaagccttccgggccggtgagttccgttatctcgtcgcgacggac
gtcgcagcccgcgggattgatattgaaaacatcacacacgtcatccaatacgatatgccg
gttgaaaaagaaagttacgtccaccggacaggtcggacaggacgtgccggagcactcgga
aaagctatcagtttggtgacggagtcggatatgcgtcgtctccgtgaagtcgaacagtac
cgcggtgaggccatcgaaagacgccaagcaccgactgaacgggaactgatccggacagct
gatgcatttgaagagaaaatcacgacagctgatgtccgggcttcaaaaacggagcagctc
aacgccgatatcatgaaactgtactttaacggcggcaagaaaaagaaactgcgtgccgtt
gatttcgtcggaacgattgcgaaaatcgaaggcatgactgcgcaggatatcggaatcatc
acgattcaggatacggtcacgtacgtggaaatcctgaacggaaaaggtccgctcgtcctg
cgggcgatgaagacaacaaaagttaaaggcaaacagctgaaagtatacgaagcgtttaaa
aaataa
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