Euwallacea similis: 136413224
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Entry
136413224 CDS
T10684
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
esim Euwallacea similis
Pathway
esim03013
Nucleocytoplasmic transport
esim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esim00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136413224 (Upf1)
03015 mRNA surveillance pathway
136413224 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esim03019
]
136413224 (Upf1)
Enzymes [BR:
esim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136413224 (Upf1)
5.6.2.5 RNA 5'-3' helicase
136413224 (Upf1)
Messenger RNA biogenesis [BR:
esim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136413224 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
136413224 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
Helicase_RecD
ATPase
UvrD-helicase
NPHP3_N
AAA_16
nSTAND3
AAA_22
SRP54
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
136413224
NCBI-ProteinID:
XP_066252729
LinkDB
All DBs
Position
13:complement(3222623..3229440)
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AA seq
1126 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSECDFTDFTMPSQTQASQHDHAGPKVQGVQ
ININISHKMGVVNQALGELQFEEEEEEFYNSKELPDFACKYCGIHEPNCMVMCNICKKWF
CNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPAKADSV
VVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLTWLVKIPSEQEQLRARQISAQQINK
LEELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQ
TQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKLWAGVGHVIKIP
DNYGEDIGIELKNGAGAPTDCTSNFVVDFIWKSTSFDRMQSALRKFAVDDTSVSAYIYHR
LLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT
IVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTDLKVVRLCAKSREAIDSPVSFLALHNQ
IRKMEGNTELQKLQQLKDETGELSSVDEKRYRMLKKLAEKELLEAADVICCTCVGAGDPR
IVRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQSL
FERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERKLAKVDFPWPVQDR
PMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTKFLRAGIKPEQIGVITPYEGQRAYLV
QYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALT
RSKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLTNMKESLIQFAKPKKLTNSEN
PGSHFMSTAMFDAREAMVPGSVYDRTNTAMNGVGPFGCLSTGFQPTRPMQMDMFGRTHDP
IGYIAPERAQAGLNLPVPMGMFMNMAHIPPRFYNQHQQAMQARQQQTQQGIRGQNRRPSQ
RQKGKNCRIQFFADIEGYLLGKNLSQDHTQPFSQSLQLTQGGMSQPGLSQPGFSLSQPGL
SQPELSQDLYMAEYQSQMDGLLSQDSTYQGDRSAFYQPNAQFSQPY
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtacggtcccagttcccaaacgctcacgtttcttgacactgaagaa
gcggatctaatcggggccgatacccagggctcagaatgcgatttcaccgattttacgatg
ccttcgcaaacccaggcctcccagcatgaccatgcagggcccaaggtacaaggggtgcag
attaacatcaacatatcccacaaaatgggagttgtaaaccaggccttgggtgagcttcaa
tttgaggaagaagaagaggagttttataacagtaaagaactccccgatttcgcatgtaaa
tactgcggaatccatgagcccaactgcatggttatgtgcaacatttgcaaaaagtggttt
tgcaatggtagaggaaacacctctgggagtcacatcattaatcacttggttcgagctaaa
cataaagaagtcactcttcacaaggatggccctttaggagagaccattttggaatgttac
agttgcggcgttaggaatgtttttgtactcggttttattcctgcaaaagctgattccgtg
gtggtattgctttgcaggcaaccatgtgctgcacaaaactccttgaaggatatgaattgg
gatcaagagcaatggaagccactgattgctgatcgttgctttttgacttggctggtcaaa
attccatctgaacaggagcaactaagagctcgtcagatttctgctcagcagattaataaa
cttgaagaattatggaaagagaatgtagacgcaacttttcaggatttggagaaacctgga
gttgatgaggagcctcagcaggttttactacggtatgaagacggttatcagtaccagaac
atttttggacctttggttaaacttgaagctgattatgacaagagactaaaagagtctcaa
acacaagaaaacattgaggtccgatgggatgtgggcctcaataagaagaccattgcttat
ttcacgctagccaaaactgacggtgatatgaagttgatgcatggggatgaactaagattg
agatatgttggtgagatgcacaaattatgggccggagtggggcacgtgattaaaatacct
gacaactatggagaggacataggaattgaactgaagaatggagcaggggctcctacagat
tgcaccagcaattttgttgttgattttatatggaagagtaccagttttgatagaatgcag
tcagctttgcgcaaatttgccgttgacgacacatcagtttcagcctatatctatcataga
ttgttaggccacgaagtagaagaagtcttatttcgttgtcatcttcccaagcacttttcg
gctcctaatttgcccgacttgaaccgctcacaagtctatgctgtcaagcatgcattacag
cgacctctatctttgattcaaggtccccctggaactggaaaaaccgtcacttcagccacc
attgtgtaccaactcgtaaagcaaaatggaggtccagtactagtttgcgctcctagcaac
actgccgtggatcagcttactgaaaaaatacataaaactgacttgaaagtcgtgaggttg
tgtgccaaatctcgtgaggccatagattctccagtgagtttcttagcattacacaaccaa
attcgaaaaatggaaggcaataccgagttgcagaagctgcagcagttaaaagatgagacc
ggagaactgtccagtgtagatgagaagagatatagaatgctgaaaaaactagctgaaaag
gagctgctagaagccgcagacgtcatttgttgcacttgtgtgggagccggtgatcccaga
atagttagactaaagtttcactcgattcttatagatgaaagcatgcaggcaactgaaccc
gaatgcatggttccagtggtactgggcgtgaaacaattgatcttagtgggcgatcattgt
caattaggaccagtcgttatgtgcaaaaaggcggctagagccggcctatcgcaatcgttg
tttgaaaggctggtagtgttaggcataagaccattcagacttgaagttcagtacagaatg
catccagagttatccaggttcccatcggactttttctacgaaggaagtcttcaaaatggt
gttagtgccgaagaaagaaaacttgcaaaagttgattttccatggccagtacaagatcgt
cccatgttctttttggtgacccaagggcaggaggaaatcgctggaagtggcaccagttac
ctgaaccgaactgaagctgcaaatgtggagaaaatcacaaccaaatttcttcgggctggg
attaaacccgagcaaataggagtaatcacaccttatgaaggccagagagcatatttagtg
caatatatgcaataccaaggatctttacacagtaaattataccaggagattgaaatagcc
agtgttgacgcatttcaaggccgtgagaaagacatcattataatgtcttgcgtgaggagt
aacgagcatcaaggaatagggtttttgaacgatcctcgtcgattgaatgtagccttgacc
cgttctaaatacgggattatcattgtaggcaacccgaaggttctatctaagcaaccgcta
tggaatcatttattatccttttacaaggaacaaaaggttttggtggaaggccctttgacg
aatatgaaagagtctctcatacagttcgcaaaacccaaaaaattgacaaattccgagaat
cctggcagtcactttatgtcaacagctatgtttgatgctagagaagccatggtgcccggt
tcagtgtatgacaggacaaatacggcaatgaacggagtgggaccgtttgggtgcctcagc
acgggtttccagcccaccagacccatgcaaatggatatgtttggacgcactcacgaccct
attgggtatattgctcctgaaagggcccaagcaggacttaatttaccggtaccgatggga
atgttcatgaatatggcccacattccaccccgcttttacaatcaacaccaacaggccatg
caggctagacaacagcaaacacagcagggtattagaggtcaaaatagacgtccgtctcaa
aggcaaaagggcaagaattgtcgtatacagttttttgctgacattgaaggttacctttta
gggaaaaacttaagtcaagaccacacacagccatttagtcaaagcttgcaactaacccaa
ggaggcatgtcacaacctggactatcgcaacccggtttcagtctgtctcaacctggttta
agccaaccagagcttagccaggacctttatatggccgaatatcagagtcaaatggacgga
ttattgtcccaagattcgacttaccaaggagacaggtctgctttctaccagccgaatgcc
caattctcccagccctactga
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