Euwallacea similis: 136414148
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Entry
136414148 CDS
T10684
Name
(RefSeq) polyadenylation and cleavage factor homolog 11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
esim Euwallacea similis
Pathway
esim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136414148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esim03021
]
136414148
03019 Messenger RNA biogenesis [BR:
esim03019
]
136414148
Transcription machinery [BR:
esim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136414148
Messenger RNA biogenesis [BR:
esim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136414148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
Pcf11_C
zf_PCFS4
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
136414148
NCBI-ProteinID:
XP_066254099
LinkDB
All DBs
Position
16:3653844..3670061
Genome browser
AA seq
1187 aa
AA seq
DB search
MTTPEVIKAEYMSSLADLTFNSKPLINVLTMLAEENLPNAKIIVQAIEEHLAKVAVDVKL
PILYLVDCIVKNVGQMYTSIFSQNIASTFCTVFKVVDEKTRLEMFKLRQTWNDVFPQMKL
YAIDVQIHQIDPAWPVTAQPANSIHLNPRFLINSTPTSQSNNYQKTEPSATPNSVPLKPA
LSATSPPSADMETLLMQEQLIQKQKELLVLQRKTLELEVLQTQVKLQEQIKAGGRRPPVN
TNILLAPEVANQLIPEVINNKVRPSGIAYRAYGQPKIKPVNPALASARPSRDPRLMRRQQ
QQKLQQLTQKTPVVATTSSMHDQKVAVLESNKNLHNKSSVRDIPRDPRLSKRGNKKSKFL
SKSREPFSDQKSRNVDKLSGALPKLNPSSSSSLSSGDLDSPPKTKRLLDKHRKREKPREF
DSASSTKRGKLQNSNKEARKEESMGVKNEVPGNFVKNVKNTNWNYVGPNLAGNTASVEDE
DLRLASTSSQNDNSIKVNSESVPAKQKSLEPTPSHISSPLNKPMDVDLRPRHHHLSPTLP
KKRTSPEVSKQPSKRSRSFDVLFGSEDTDLRQIAVQAEEARENGAIDRPATPPPPIISAE
KSIQNSVRRALPASPIRSDLDAVRAKLANVTNRDKVLSRSSNFDVSNVISQSLVTAPTTG
GYQVQLPPNLPSTTTSQVPTMPVLNINELFQKLVASGVVKTQEKPQGHFQESTPIPSLTN
NRASERASAKPHQQENGKPQRRNLSKALKPLTFNRPETLKVRQEALYNTMYSGMQCSSCG
MRFPLEASMWYSQHLDWHFRQNRRGKKNSRVANSRKWYYSLRDWKNYEELEDLEEREKNY
FDQQQQQAGVAEEADEEVEIPTVSADPRTTDERCYMCRDIFEQFFNEEKEEWHLRNAIRV
EDKTYHPACYEDYQKSILNDTLDDSRNEGDFQNDLIPGLEIVLDDEDDDDEIVSLIDDDE
EVPEDALSPAKEEEVAPEDDGDDDDVILNEVAPVRIVVDDDDDEVPTTEYNEPVVIKQEK
PALDDDGFVDVDEIITLKEIGQVKIKSEPVEDDFRAVDLVHTSDIRTDDENSIKMTPCEK
ISVPVTSHLQLITSMDGNIELSAPTTARSTISGGNKIKINISKPLPVITPKETSETGDSS
DVIVKASEIPMEELDILNYKPALQNVPLKKLPPVQKCTELTGLCSIM
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgacgacacccgaggtgattaaggctgaatacatgtccagtttagcagacttgactttt
aacagcaagcctctaatcaatgttctaaccatgctggcagaagaaaacttgcccaatgcc
aagattatagtacaggccattgaagagcatttggctaaggttgctgttgacgtcaaattg
ccaattttatacctagttgactgtatagtgaagaatgttggacaaatgtatactagcatc
ttcagtcaaaacattgcatccacattttgcacagttttcaaagtggttgacgagaagacc
cgactagaaatgttcaagctacgtcaaacatggaacgacgtgttccctcagatgaaactt
tatgcaattgacgtgcaaatccatcaaattgatccggcatggccggttactgcgcagccc
gcaaacagcattcatctcaatcccaggtttctgataaattctacacctacaagtcagtcc
aataactaccaaaaaacagaaccctcagcaactccaaactcagttcctttgaaaccagcg
ttgtcagctacatcacccccttctgctgatatggagacgttactaatgcaagagcaatta
attcagaaacagaaggagttattggttttacagaggaagactttggaacttgaagtgttg
caaacccaagtcaagttgcaagaacagataaaagctgggggccgacggcctccagttaac
actaatattcttttggcacctgaagtagccaatcagctgattcccgaagttatcaataac
aaagttaggccttcgggcattgcatatcgtgcttatggtcaaccaaaaatcaaacccgta
aatccagctttagcctcggctcgtccaagcagagatcccaggttaatgcgtcggcagcaa
caacaaaagttgcaacaactgacccaaaaaacgccagttgtcgctacaacttctagtatg
cacgatcaaaaagttgcagttcttgaaagtaataaaaatctacacaataaatcgagtgta
agagatattcctagagaccctcgcttatcaaagagaggcaacaaaaaatcaaaattctta
tccaaatcccgcgaaccattttccgatcagaagtcgcgtaatgtcgataaactatcgggc
gctctccctaaattaaaccctagctctagtagtagcttgtccagtggcgatttagattcg
cctccgaaaactaaacggttgttggataaacacagaaaacgtgaaaaaccgcgggaattt
gatagtgcctcgtccaccaaaaggggaaagttgcaaaactcgaataaggaagccagaaag
gaagaatctatgggggttaagaatgaagtccctggtaattttgtgaagaatgtaaagaac
acgaattggaattatgtggggcccaatttggcgggaaacacggcctctgtcgaggacgaa
gatttgcgtttagcgtcgacaagcagtcagaacgataattccattaaagttaatagtgaa
tcagttccagccaagcaaaaatcccttgaaccaactccatcacatatttcctctccttta
aacaaaccaatggatgtagatctgaggccacgacatcatcacctttctcccactttgcct
aagaagcgaacatcacctgaggtgtccaagcaaccatcaaagagaagcaggagttttgat
gttttatttggcagtgaagataccgatttgcgacaaattgccgttcaagctgaggaggct
cgtgagaatggagctattgatagacccgcaacacctcccccgccaattatctctgcagaa
aaatcaattcaaaattctgttagacgggctttacctgcatcaccaataagaagtgatttg
gatgccgtcagggccaagttggccaatgtcaccaatagggataaagtattgagtagatca
tctaactttgatgtatcaaatgtcatctctcaatcgttggtaaccgcgcccaccactggg
ggctatcaagtccagctgcctcccaacttgccatccacaacgacgtcgcaagtacctaca
atgcctgtgttgaacataaatgaacttttccagaagctagttgcttctggagttgttaaa
actcaggaaaagcctcaaggacattttcaggaatctacccctatcccttcactaacaaat
aacagagcttcagagcgagcttctgcgaaacctcaccagcaagaaaatggaaaacctcaa
aggcgcaacttgtctaaggcactaaaacctctaactttcaacagaccggaaactttgaaa
gtacgccaagaggcactttataacactatgtattcaggaatgcaatgctcaagctgcgga
atgcgatttcctcttgaggccagtatgtggtacagtcaacatttagactggcacttcagg
cagaatagacgtggcaagaagaactctagagtagcaaatagcaggaagtggtactattca
ttgagagattggaagaattatgaagagcttgaagatctcgaggaacgggagaaaaattac
tttgaccaacaacagcaacaagccggagttgcagaagaggccgatgaagaagtggaaatt
cctacagtttcagccgatcctagaacaaccgatgaacgttgttacatgtgtagagatatc
tttgagcagtttttcaatgaagaaaaggaagaatggcatctacgcaacgccattagagtg
gaggataaaacttatcatccagcttgttatgaggattatcaaaagtcaattcttaatgac
acattggatgacagcaggaatgagggagatttccagaatgacttaattccagggctggaa
atcgtattagatgatgaagatgacgatgacgagattgtttcgttgattgatgatgatgaa
gaggtcccggaagatgctcttagtcctgcaaaggaagaagaagtagctccagaagatgat
ggcgatgatgatgacgttatcctgaacgaagtggcccccgtcagaattgttgtagacgat
gatgatgatgaagttcctacaacggagtacaatgagcctgtagtgattaaacaagagaaa
cctgctttggacgatgatggttttgtggacgttgacgaaatcatcacgctaaaagaaatc
ggacaagtgaagataaagagcgaacctgtcgaagatgatttccgggctgtagacttagta
cacacctcagacataagaactgacgatgaaaattcgatcaaaatgacgccctgtgaaaag
atctctgttccagtgacatcacatctccagctgataacctcaatggatggaaacatagaa
ttaagtgcccctacaaccgcgcgctccacaataagtggaggaaataagattaaaataaac
atttcaaagccattacctgtgataacccccaaggaaactagtgagactggtgatagtagt
gatgtaatagtgaaagctagtgaaattcccatggaagagcttgatattctgaactataag
cctgcccttcaaaacgtgcccctgaaaaagctacctcctgtccaaaaatgcaccgagctg
accgggttgtgctctataatgtga
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integrated database retrieval system
