Euwallacea similis: 136418742
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Entry
136418742 CDS
T10684
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
esim Euwallacea similis
Pathway
esim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136418742 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esim03019
]
136418742 (Mtr4)
03041 Spliceosome [BR:
esim03041
]
136418742 (Mtr4)
03009 Ribosome biogenesis [BR:
esim03009
]
136418742 (Mtr4)
03016 Transfer RNA biogenesis [BR:
esim03016
]
136418742 (Mtr4)
Enzymes [BR:
esim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136418742 (Mtr4)
Messenger RNA biogenesis [BR:
esim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
136418742 (Mtr4)
Spliceosome [BR:
esim03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136418742 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
136418742 (Mtr4)
Ribosome biogenesis [BR:
esim03009
]
Eukaryotic type
Pre-60S particles
Helicases
136418742 (Mtr4)
Transfer RNA biogenesis [BR:
esim03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
136418742 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
Sorb
Mt_ATP_synt
Motif
Other DBs
NCBI-GeneID:
136418742
NCBI-ProteinID:
XP_066261007
LinkDB
All DBs
Position
37:complement(510673..518448)
Genome browser
AA seq
1030 aa
AA seq
DB search
MAQSIDDLFNCFDENAEENTEQDDEKLTGTQESSRRIPEVSIKNVKREHEEDEEVTVKRV
RVDDVNVGDINFDELRNRIVVHSIDNLDSCTHEVAYPPGQKYASLQPREGDPVKVYPFTL
DPFQKESILCVDNNQSVLVSAHTSAGKTVIAEYAVAKSLKNKQRVIYTTPIKALSNQKYR
EFLEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDK
ERGVVWEETLILLPHNVHFVFLSATIPNARQFAEWVAHLHQQPCHVVYTDYRPTPLQHFI
YPAGGSGIHMVVDESGVFKDDSFNAAMAVLQTGDAAKGDQKGRRGGIADKDPSQSDIFKV
VKMVMERNFAPVIVFSFSKKECELYAMQMTKLDFNTSAEKQLVDEVFNNAMDVLSEEDRH
LPQVDNILPLLKRGIGIHHGGLLPILKETIEIMFGEGLIKALFATETFAMGLNMPARTVL
FTGMRKFDGHERRWITSGEYIQMSGRAGRRGLDDKGIVILMVDEKVPPAAGREIVKGLPD
PINSAFHLTYNMVLNLLRVEEINPEFMLERSFYQFQNQTNIPILHENYIKKLNEFNAFDI
TKEDQVASYYAVRQELDDLAVTFRTYITKPQYLVPYMQPGRLVKIKTQEAEYDWGAVVNF
KKTQEVQNTRKGGKVKTKAVTKVILDILLNVIPEEGENSNIIPKPCADGQKGETEIVCVD
SKFVTHISQVRLLCPSDLRSKDARKGMFKSIKEVKKRFPEELPLLNPIEDMKINEPEFLD
VLKKIEMLEKKLYEHPLHGSDVLDTEYEKYEKKLLIDKELTQTKKKLLDAKSVLQLDELK
CRKRVLRRLGYCTNSDVIQLKGRVACELSSADELLITEMLFNGLFGNLTPQQVCALLSCF
VCDERVNETVRLTEELSGPLRQMQDLARRIAKVSNEARLPIDEDQYVGQFKPHLMDIVFA
WSNGASFAELCQMTEVFEGSIVRCMRRLEELLRQMIQASKTIGNIDLEEKFNIAIKIIKR
DIVFSSSLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtccatcgacgacctttttaattgtttcgacgaaaatgccgaagaaaatacc
gagcaggacgatgagaaattaacaggaacccaggaatccagcagaagaattccagaggtc
agcataaaaaatgtgaaaagagaacatgaggaggacgaggaagtgactgttaaaagggtc
agagtggacgatgttaacgttggtgatatcaattttgatgaactcaggaacagaatagta
gttcatagtattgacaatcttgactcatgtactcatgaagtggcctatccccctggtcaa
aagtatgcctccttacaaccacgagaaggagatccagtcaaagtatatccattcacacta
gatccatttcaaaaagagtcaattttgtgtgttgacaataaccagtcagtgttggtatca
gctcacacatcagcaggcaaaactgtaattgcagagtatgctgtagcaaaatcactgaaa
aataaacagagagtaatctacactactcccattaaagctttatcaaaccaaaaatatcgg
gagtttttagaggaatttaaagacgttggcctggtaactggcgatgttaccatcaatccc
agtgcctcatgccttataatgactactgagattttacgaaatatgctgtaccgaggatcg
gaaataatgcgcgaagtaggttgggtggtgtttgatgaaatccattacatgcgagacaag
gaaagaggggtagtttgggaggaaactttaattttgttgcctcataatgttcattttgta
ttcttgtcggccaccatccctaacgctagacaatttgccgaatgggtggctcatctacat
caacagccctgtcatgtagtttatacagattacaggcctacacctctacaacattttata
tatcctgcagggggcagtggaattcatatggttgtagatgaatcaggtgttttcaaagac
gatagttttaacgcagcaatggcagtgctgcaaacaggtgatgctgcaaagggcgaccaa
aaaggccgccgggggggtatagctgacaaggatccgagtcagtcggatatttttaaagtt
gtcaagatggttatggaaaggaattttgcgcctgttatcgttttcagtttcagcaagaaa
gaatgcgaattatatgctatgcaaatgactaaattggattttaacacatctgctgaaaaa
caattagttgatgaggtctttaataatgcaatggacgttctttctgaagaagacagacat
ttgcctcaagtagacaatattcttcctttgcttaaaaggggaattggtatacatcatgga
ggtttacttccaattttgaaagaaactattgaaattatgtttggggaagggttgattaaa
gctttatttgctacagaaacctttgccatggggttaaatatgcctgcaaggacagttctt
ttcactggtatgagaaagtttgacggtcatgagcgtagatggattacatctggagaatac
attcaaatgtccggcagagccggtaggagaggtttggatgacaagggcatagtaatttta
atggtcgatgaaaaggtgcctccagctgccggtagagagatcgtaaagggcttaccggac
cctataaattcggctttccatttaacttacaatatggtcttgaacttattaagagttgaa
gaaattaaccctgaatttatgctagaaagatcattttatcagtttcaaaatcagactaat
atccccatattacatgaaaattatattaagaaattaaatgagtttaatgcttttgatatt
acaaaggaagatcaagtggcttcttattatgctgttagacaggaattggatgatttagcg
gtcacgtttcggacatatatcacaaaaccacaatatctggttccgtatatgcaaccggga
agattagttaagattaagacacaagaggccgagtacgattggggagcagtagtcaatttc
aaaaaaacccaggaggtacagaatactagaaaaggtggaaaggttaaaacgaaagctgta
actaaagttatactggatattttgttaaatgtgatcccagaagaaggagagaatagtaat
attattccgaagccgtgtgctgatggacagaaaggtgaaaccgaaattgtgtgtgttgat
tcaaaattcgttactcatatatctcaagttcgattgttatgtccttccgacttgcgatcg
aaggatgcgagaaagggaatgttcaaatcaataaaagaagtaaaaaaacgatttccagaa
gaacttcctttgttgaacccaattgaagacatgaagatcaatgaacctgagtttcttgat
gtcttgaagaaaatagaaatgttagaaaaaaagttgtatgaacatcctcttcatggaagt
gatgttttggataccgagtacgaaaaatacgagaaaaaacttttgatagacaaagagtta
acacaaactaaaaaaaaattactggatgccaaatcagtactgcaattggacgaattaaag
tgcagaaaaagagtattacggcgattgggttattgcacaaacagtgacgttattcagctt
aaaggcagagtagcttgcgagttgagcagcgccgacgaattacttatcacggaaatgttg
tttaatggtctttttggcaatttgacacctcagcaggtgtgcgctttactgagctgtttt
gtctgcgatgaaagggttaacgagactgtaagacttacagaggagttatccgggcctttg
aggcaaatgcaggacttggcacgaagaatagcgaaagtgagcaacgaagcgcgattacct
atagacgaagatcagtacgtgggacaatttaagccgcatttaatggatatagtgttcgca
tggagtaacggcgcctctttcgccgaattatgtcaaatgacggaagttttcgaaggttct
attgtgcgttgtatgaggcgattagaagagttgctgcggcaaatgatacaggcctctaaa
actatcggcaatatcgatttggaagaaaagttcaatatcgccattaagattattaagaga
gatatagtattctcttccagtttgtacctgtag
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