Sinorhizobium sojae: SJ05684_c09440
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Entry
SJ05684_c09440 CDS
T05052
Name
(GenBank) Metallo-beta-lactamase family protein, RNA-specific
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
esj
Sinorhizobium sojae
Pathway
esj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ05684_c09440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esj03019
]
SJ05684_c09440
Messenger RNA biogenesis [BR:
esj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SJ05684_c09440
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_3
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ASY62403
UniProt:
A0A249P8Z2
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Position
932010..933677
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AA seq
555 aa
AA seq
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MAQEEELVFLPLGGVGEIGMNLGLYGYGKPGNRQWIMVDCGVTFAGPDLPGVELILPDIS
FLAEERRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRDYEKARSEIP
VTVFKSGDRINVGPFSIEAVGVNHSIPEPMSLVIRTPLGTVVHTGDWKIDLEPSLGPLTD
ETRFLQIGEEGVLALVCDSTNALRDGVSPSERQVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVSVARDLGLMEGLKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIVTD
GEALVHVSGHPRRNELQQMYRWLNPRIVVPVHGEAAHLTAHAELARHSGIADVPRLRNGQ
MLRLAPGPAEVIDETPHGRIFKDGMLIGDFDEMGIGERRKLSFAGHVSVNVVLDNRYDFL
NDPVVVPIGLPEFDDEGDDMSDVLYDSVLGAVESIPRPKRRDLATLQEAVRRAVRSTANQ
VWGKKPIVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggaagaagaactggttttcttgccgctcggcggcgtcggcgagatcggcatg
aatctcggcctctacggctatggcaagcctggcaaccgccaatggatcatggtcgattgc
ggcgtgacattcgccggcccggatctcccgggcgtcgaactgatcctgccggatatctcc
ttccttgccgaagagcggcgcaacctcaaggccatcatcatcacgcatgcgcatgaagac
cattatggcgccttgaacgatctttggccggggttgaacgtccctgtctatgcctcgccc
ttcaccgccggcatgctcgaggcgaagcgcgattacgagaaggcgcgcagcgaaattccc
gtcacggttttcaagtcgggggaccgcatcaatgtgggtccgttcagtatcgaggcggtc
ggcgtcaaccactccattcccgaaccgatgtcgctcgtcatccgcacgcccctcggcacc
gtggtgcatacgggcgactggaagatcgatcttgaaccgtcgctggggccgctgaccgac
gagacgcgctttctccagatcggcgaggagggcgtgctggcgctcgtctgcgattcgacg
aatgcgctgcgcgacggcgtctcgccgtcggagcggcaggtctccgagagcctggccaag
atcatcgccgatgccgagggccgcgtcggcatcacgaccttctcctccaatgtcggccgt
attcgttcggtcgccgaggcggcggaggccgcgggccgggaagtgctcctgcttggcagt
tcgatgaagcgcgtcgtctccgttgcaagggatctcggcctgatggaagggctgaagccg
ttcctcgccgaggacgaattcggctacatcccgcgcgacaaggtggtcgtcatcctgacg
ggcagccagggagagccgcgggccgcgcttgcgaagatcgcccgcgatgagatgcgcaat
gtcgcgttctcggccggtgacaccatcgtgttttcatcgcgcaccattccgggcaatgaa
aaggcgatcaacgacatcaagaacggcctgatcgagcagggcatccacatcgtcaccgat
ggcgaggcgctggtgcatgtctccggtcacccgcgacgcaacgagttgcagcagatgtac
cggtggctgaacccccgcatcgtcgtgccggtacatggggaagcggcgcatctgacggcg
catgccgagcttgcgcggcattccggcattgcggacgtgccgcgcctgcgcaatggccaa
atgctgcgattggcgcccggtccggcggaggtgatagatgagacaccccacggccgcatc
ttcaaggacggcatgctgatcggcgacttcgacgagatgggcataggcgagcggcgcaag
ctctcgttcgccggccatgtttccgtcaatgtggtgctcgacaatcgctatgatttcctg
aacgatccggtggtcgtgccgatcggacttcccgagttcgatgacgaaggcgatgacatg
tccgacgtgctctatgactcggtgctcggtgcggtggaaagcattccccgtcccaagcgg
agagatctcgcaaccctgcaggaagcggtccggcgcgccgtgcgcagcacggccaaccag
gtttggggcaagaagccgatcgtcacggtgttcgtcaccaaggtctga
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