Eriocheir sinensis (Chinese mitten crab): 126992374
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Entry
126992374 CDS
T08870
Name
(RefSeq) spliceosome RNA helicase DDX39B-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
esn
Eriocheir sinensis (Chinese mitten crab)
Pathway
esn03013
Nucleocytoplasmic transport
esn03015
mRNA surveillance pathway
esn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126992374
09122 Translation
03013 Nucleocytoplasmic transport
126992374
03015 mRNA surveillance pathway
126992374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esn03019
]
126992374
03041 Spliceosome [BR:
esn03041
]
126992374
Enzymes [BR:
esn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126992374
Messenger RNA biogenesis [BR:
esn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126992374
Spliceosome [BR:
esn03041
]
Complex C
Other components
EJC/TREX
126992374
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126992374
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126992374
NCBI-ProteinID:
XP_050707046
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MADPEPELLDYEEDEEAVDGGVGETPEAAPAKKDVKGTYVSIHSSGFRDFLLKPEILHAI
VDCGFEHPSEVQHECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMC
HTRELAYQIAKEYERFSKYMPTVKVGVFFGGMNIQKDEDTLKNNCPHIVVGTPGRVLALV
RNKKLSLRHLKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKDIRPVCK
KFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNKKLFELLDALEFNQVVIFVKSVQRC
VALATLLVDMNFPAIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKTLNEVQERFDVNITELPDEIDL
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggccgacccagagcccgaactgctcgactacgaggaggatgaggaggccgtggacgga
ggagttggggagaccccagaggctgccccggccaagaaggacgtgaagggcacctatgtg
tccatccactcctcgggcttcagggacttcctgctgaagccagagatcctgcacgccatt
gtggactgtggctttgagcatccctcagaagtgcaacacgagtgcatcccacaagcagtg
ttgggcatggacatccttggccaggccaagtcaggcatgggcaagacagctgtgtttgtg
ctggcaacactgcagcagattgaccctgtggatggccaggtgtcagtgctcgtcatgtgc
cacacccgagagctcgcctaccagatcgccaaggagtacgagcgcttcagcaagtacatg
cccacggtgaaggtcggagtgttcttcgggggcatgaacattcagaaggatgaagacaca
ctcaaaaacaactgcccacacatcgttgtgggcaccccgggcagagtgctggccctcgtg
cggaacaagaagctgagtctgcgtcacctcaagcattttgtgctggatgagtgcgacaaa
atgttggaacagcttgacatgcggcgggacgtgcaggagatcttccgcaacaccccacac
gagaagcaggtcatgatgttctccgccacgctcagcaaggacatccgccccgtctgcaag
aagttcatgcaagaccccatggaggtgtatgttgacgatgaggccaagctgaccctccac
ggcctacagcagcactacgtcaagatcaaggagaatgagaagaataagaagctgtttgaa
cttctcgacgcgctggagttcaaccaggtggtgatcttcgtcaagtcagtgcagaggtgc
gttgcgttggccacactgctggtggacatgaacttcccggccattgccatccaccgtgcc
atgcagcaggaggagcggctgagcaggtaccagcagttcaaggatttccagaagcggatc
cttgtggccaccaacctgttcgggcgaggcatggacatcgagcgcgtcaacattgtgttc
aactacgacatgccggaggacagcgacacctaccttcatcgcgttgccagggccgggcga
tttggcaccaaggggctggccgtcaccttcgtcagcgaggagagtgacgccaagaccctg
aatgaggtgcaggagcgcttcgacgtcaacatcacggagctccctgacgagattgacctg
tcatcgtacattgagggacgctag
DBGET
integrated database retrieval system
