Eriocheir sinensis (Chinese mitten crab): 127003355
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Entry
127003355 CDS
T08870
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
esn
Eriocheir sinensis (Chinese mitten crab)
Pathway
esn03013
Nucleocytoplasmic transport
esn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127003355
03015 mRNA surveillance pathway
127003355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esn03019
]
127003355
Enzymes [BR:
esn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127003355
5.6.2.5 RNA 5'-3' helicase
127003355
Messenger RNA biogenesis [BR:
esn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127003355
mRNA cycle factors
Common to processing body (P body) and stress granule
127003355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
AAA_22
nSTAND3
SRP54
AAA_32
AAA_7
PhoH
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
127003355
NCBI-ProteinID:
XP_050725844
LinkDB
All DBs
Position
25:10974218..10988474
Genome browser
AA seq
1121 aa
AA seq
DB search
MSVDAYGPSSQSLTFYDTEETDLLGADTQGSEYEFNLTLGSQTQTQGDPLDKTQPSQSQV
TVNGDVEAEVEKVTETLGELQFEEEEDENAFYTKELPEWACRYCGIHDPASAVMCNVCHK
WFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFVLGFIPAKAE
SVVVLLCRQPCAAQSSLRDMNWDPEQWKPLINDRALLPWLVRVPSEAEQLRARQITAQQI
NKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLEADYDKKLKE
SQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKPWSGVGHVIK
IPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVDDSSVSPYIY
HRLLGHVEMDELIFRHIHLPKQLSAPNLPTLNTSQQYALKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVKQTGGSVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNLEDNGELQKLQQLKEETGELSSADEKRYRMLKKQAEKTLLEAADVICCTCVGA
GDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVMCKKASRAGL
SQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVADADRTMKGVSFPWP
QADKPQFFYVTSGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIGVITPYEGQR
AYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLSDPRRLN
VALTRARYGIIIVGNPKVLSKQGLWNHLLHHFKEKKVLVEGPLNNLKESMMQFSKPKRLV
NAANPGSHFMTTAMYDAREAMVPGSMYDRSGPINGATPQPSPYFRGPTYDMYGRAHDTLD
YISTEHSQAGLSNLPVPVGMFMNMAHVPPRFYQQHQQALAARGGRGGGAGMRGNRGGSRK
LAKNMGGAGGPQLSQPFSQDPSMQNYSQPGLTQGHLSQGMSGPGLSGLSQGLSQAELSQD
SYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagacgcgtacggccccagctcccagagtctgaccttctatgacaccgaggag
actgaccttttgggggctgacacgcaggggtcagagtatgaattcaacttgaccctcggc
agccagacccagacccaaggcgacccgctggacaagacacagccctcccagagccaggtc
actgtcaatggggatgtggaggcagaggtggagaaggtgacggagacgctgggagaacta
cagtttgaggaagaggaagatgaaaatgctttctataccaaggagctccctgagtgggcg
tgccgctactgtggtatccacgacccggcctcggcggttatgtgcaacgtttgccacaag
tggttctgcaatggccgtgggaacacctccggctcccacatcatcaaccacttggttcgc
gccaagcataaggaggtgagcctgcacaaggatggcctggtgcgggacacggtgctggag
tgctacgcgtgtgccgtcaagaatgtgtttgtgcttggcttcatccccgccaaggccgag
tcggtggtggtgctcctctgccgccagccttgtgcagcacagagctccctgagagacatg
aactgggacccagaacagtggaagcccctgatcaacgaccgtgccctgctgccttggctg
gtccgggtgccctcagaggccgagcagcttcgtgcccgccagattacggcacagcagatc
aacaaactggaggagctgtggaaggagaatgcctctgccacctttgatgacctggagcgg
ccgggagtggacgaggagccccagcaggtgtgcctcaggtacgaggatgggttccagtac
cagaacatctttggtcccctggtgaagctggaggctgattatgacaagaagctgaaggaa
tcccaaacccaagacaagatagaagtgcgctgggacatcggcctcaacaagaagatctgc
gcttacttcaccctggccaagactgacggagacatgcggctcatgcacggagatgagctg
cggctgaggtaccttggggacttgcacaagccctggtccggggtggggcacgtcatcaag
atccctgacaactttggggaggaggtcggcattgagctcaagtccaacgtcggtgtcccc
acagactgccgggacaagtttgtggttgactttgtgtggaagtccaccagcttcgatagg
atgcaggctgccctccgtaagtttgctgttgatgactcctctgtgtcaccctacatctat
caccgactgctgggacacgtggagatggatgaactcatcttccgccacatccacctgccc
aaacagctgtccgccccaaacctgccaaccctcaacacttcacagcaatatgccctgaaa
catgccctgcagcgccccctgtccctcatccaaggccccccaggcacaggcaaaactgtg
acctctgccaccattgtgtaccagctggtgaagcagacgggtggctccgtgctggtgtgt
gccccctccaacactgccgtcgaccagctcaccgagaagattcacaagactggattgaag
gtggtgcggctttgtgccaagtcccgtgaagccattgactctcctgtttccttcctcgcc
ctccacaaccagatccgcaacttagaggacaatggtgagcttcagaaactgcagcagctc
aaggaggagactggtgagctctcttcagctgacgagaagcgctatcgcatgctgaagaag
caggccgagaagaccctgctggaggctgctgacgtcatctgctgcacgtgtgtgggtgct
ggagaccccaggctggctcgcctcaagttccactccatccttattgatgagtccatgcag
gccactgaacccgagtgcatggtcccggttgtcctgggggccaagcaggtgatcctggtg
ggggaccactgccagctggggccagtggtgatgtgcaaaaaggcctcacgtgctggcctc
tcacagtccctgtttgagcgcttggtcgtccttggcatccgacccttccgactcactgtc
cagtaccgcatgcacccccagctggctcaattcccctctaacttcttctacgaaggctcc
ctgcagaatggtgttgctgatgctgatcgcaccatgaagggcgtgagcttcccttggccc
caggcagacaagccccagttcttctatgttacatctggccaggaggagatagctggctct
gggacctcctacctgaaccgcacagaagcctcaagcgtggagaaactggtcacacgtttc
cttaattcaggggtgaagccggagcagattggagtcatcaccccttacgagggtcaaagg
gcttacctggttcagtacatgcagtaccaaggccccctcaaccagaagctgtaccaacgg
ctggaggtggccagtgtggacgccttccagggccgggagaaggacctcatcatcatgtcg
tgtgtgcggtccaacgaacaccagggcattggcttcctctctgacccccggcgcctcaac
gtggctctgactcgggcacgctatggcatcattattgtcggcaatcctaaagtgctctcc
aagcaaggactgtggaaccacttgctgcaccatttcaaagagaagaaggtgctggtggag
ggtccgctcaacaacctgaaggagtctatgatgcagttcagcaagcccaagcgcctggtg
aacgctgccaacccaggctctcacttcatgaccactgccatgtatgacgcccgtgaggcc
atggtgccaggctccatgtatgaccgctccggacccatcaatggcgctacacctcagccc
tcaccttacttcagaggtccaacctatgacatgtatggccgtgcccacgacactctggac
tacatctccacggagcactcccaggccggcctcagcaacctgcctgttccagtgggcatg
tttatgaacatggcccacgtgcccccacgcttttaccagcagcaccagcaggccctggca
gcccggggtggccgtgggggaggggctgggatgcggggtaaccggggaggctccaggaag
ctggccaagaatatgggcggggcagggggtccccagctctcccagcccttcagtcaggac
ccaagcatgcagaactactcccagccgggactcacccagggccacctgtcacagggtatg
tctggtcctggtctgagtggactctcccagggactgtcccaggcggagttgtctcaggac
tcgtacatggtggaccagttccagagccagaccgacggcctcctctcgcaggactccacc
taccagggcgaccgtgcgttcttcaccccggcatcacaaacgcaccacttctcacagcca
tactga
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