KEGG   Eriocheir sinensis (Chinese mitten crab): 127005425
Entry
127005425         CDS       T08870                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
esn  Eriocheir sinensis (Chinese mitten crab)
Pathway
esn03030  DNA replication
esn03410  Base excision repair
esn03420  Nucleotide excision repair
esn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:esn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127005425
   03410 Base excision repair
    127005425
   03420 Nucleotide excision repair
    127005425
   03430 Mismatch repair
    127005425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:esn03032]
    127005425
   03400 DNA repair and recombination proteins [BR:esn03400]
    127005425
Enzymes [BR:esn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     127005425
    6.5.1.6  DNA ligase (ATP or NAD+)
     127005425
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     127005425
DNA replication proteins [BR:esn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    127005425
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     127005425
DNA repair and recombination proteins [BR:esn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     127005425
   NER (nucleotide excision repair)
    Other NER factors
     127005425
   MMR (mismatch excision repair)
    Other MMR factors
     127005425
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 127005425
NCBI-ProteinID: XP_050730222
LinkDB
Position
30:1844545..1861422
AA seq 1210 aa
MVQKSILSFFSAKAAGAGEAEGSSSNAGGGGRRTAAAVAKESPVKRKVNRRSRIIESDSE
SEQEQDEEEEEEEVEVKKNGDVEERTKGVKGIESSTRKKLDQWRFDKKEEEENEEKAEEE
KENVKSNNTPKETPDGKKGKGKNEKKEKTPKKEGKTPKGKKTETTKMENGKMTEEEKMEV
EEDEKREKKEAGEDKRKKGEEEEMGGHPSSSFITPKKELQAPLGKSPGFTPETVPPLRKT
AQKRKSGGMEESPANGTKKQKKEEKKEEDKEDRTPKQRRTRKKLIESDSEEEEVEKKEEE
EEDKEEKGGKEKKTSPAQRPKPASIHSFFTVSKSKPKEKKEELEEEEEKMEVEEEEEHST
SPQKKQREGRGRGGGGGENAVSRIKMEWESEEEEEEEEEGGGGGGGGGKKKAVKEFPKTK
KEEEKKKGKGKKVKEEEEEEEEEEEEGGGGGKKAMKKSPKTKKEEEKKKGRGKKGKEEKE
EEEKKGKGRKTKKEMKEEEEKEEKDKENTSKITPKKEKEEEEEEKKTLKKEEGPKKTLVN
PFAARMSGSSGSDAGADYNPRKGNYHPIDDAFWTKGQKVPYLALAKTLEAIEETSGRLKM
VEILANFLRSVIVLSPDDLLFCVYLCLNKVAPAFEGLELRIGPTILIRAIAQASGRSADK
IKADAERLGDLGVVAEMSRSNQRVMIQPAKLTVPGVFHKLKEIALMTGHASQTKKIDMVK
GMYVACRYCEAKYLIRSLGGKLRVGLAEQSVLQAIAQACFLTPPGQDYPPEVLDAGAGRS
AEKVKAEVDEYALILKTTYCEFPSYDKIIPVLLKEGLKELPNHCCLTPGVPLKPMLAHPT
TGVSEVLKRFENAKFTCEFKYDGERAQIHLKEDGTINIYSRNQEDNTSKYPDIIARFKNG
VGKDVKSCVIDSEAVAYDREKKRILPFQVLSTRKKKDAHESEITVQVCVFPFDLLYLNGE
PLVREPFERRRQLLRENFTEVEGEFMFAQSMDATNTEDIEEFLEESIKGNCEGLMVKTLD
VEATYEIAKRSRNWLKLKKDYLDGVGDTIDAVVIGGYLGKGKRAGNYGGFLLACYDEDNE
EYQSLCKIGTGFSEEDLAKHTEFFKQHLIDKPKSYYRFDNAVAPDHWFDAVQVWEIKCAD
LSISPVHKAAQGIVDKEKGISLRFPRFLRIREDKTPENATSASQIAELYRSQDQIKNSKA
DNAGDEEDFY
NT seq 3633 nt   +upstreamnt  +downstreamnt
atggtacagaagtcgatcttgtcattcttctctgccaaggcagccggcgcaggagaggct
gagggcagcagtagcaatgcaggtggtggaggcaggaggaccgccgccgctgttgccaaa
gagtcgcccgtgaagcggaaagtgaacaggaggagtcgcataattgagagtgacagtgaa
agtgaacaggagcaggatgaggaggaggaggaggaggaggtagaggtgaagaagaatggc
gacgtggaggagagaaccaaaggagttaaaggaatcgagagcagtacacgcaagaagctg
gaccagtggagatttgacaaaaaggaagaagaagaaaatgaagaaaaggcggaggaggaa
aaggaaaatgtaaaatccaacaatacccccaaggaaacaccagatggaaagaagggaaaa
gggaagaatgagaagaaggaaaaaacaccaaagaaggaaggaaagaccccaaaaggtaag
aaaacggaaacaacgaaaatggagaatgggaagatgacagaggaagagaagatggaagtg
gaggaagatgagaagagggagaagaaggaagctggtgaggataagaggaagaagggggag
gaagaggagatgggtgggcatccttcctcttccttcatcacccccaagaaagagttgcag
gctcctcttgggaagtctcccggattcactcccgagactgtcccgcccttaaggaaaaca
gcccagaagaggaaaagtggaggcatggaagaaagtccggcaaatggaacgaagaaacag
aagaaggaagagaagaaggaggaagacaaggaagacagaacccccaaacaaaggagaaca
aggaagaagttgattgagtctgatagcgaggaggaagaggtggagaagaaggaggaggag
gaggaagacaaggaagaaaaaggaggaaaagagaagaaaacatcaccggcgcaaagacca
aaaccagcgtccattcatagtttcttcactgtcagcaagagcaaacccaaggagaagaag
gaggaattagaagaagaggaggagaagatggaagtggaagaggaagaggagcactccaca
tcaccacagaagaaacagagggagggaagaggaagaggaggaggaggaggagaaaatgca
gtctcacgcatcaaaatggagtgggagtcggaagaggaagaggaggaggaagaagaagga
ggtggaggaggaggaggaggagggaagaaaaaagcagtgaaggaattcccgaagacaaag
aaggaggaagagaagaagaagggaaaaggaaagaaagtaaaggaggaggaggaggaggag
gaggaggaagaggaagaaggaggaggaggagggaagaaagcaatgaagaaatccccaaag
acaaagaaggaggaagagaagaagaagggaagaggaaagaagggaaaggaagagaaggag
gaggaggagaagaaaggaaaagggaggaaaacgaaaaaggaaatgaaggaggaggaggaa
aaggaggaaaaagacaaggaaaacacctcaaaaatcaccccaaaaaaggaaaaagaagag
gaagaggaggagaagaagacgctgaagaaggaggaagggccaaagaagactctcgttaat
ccctttgccgcgagaatgtcggggtcatcggggagtgacgccggggccgattataacccc
agaaaaggaaactaccacccgatagatgacgccttctggactaagggacaaaaagtgccg
tacctggccctggcgaagacccttgaggcgatagaggagaccagcggccgcctgaagatg
gtggagatccttgccaacttcctgcgttccgtcattgtcctgtcccctgatgacctgctc
ttctgcgtgtacctgtgtctgaacaaggtggcgcccgcttttgaaggcttggagctcaga
atcgggcccaccatcctcatccgtgccattgcccaggcatccggacgcagcgccgacaag
atcaaggcggatgcggagaggctgggtgaccttggggtggttgcggagatgtcgcgctcc
aaccagcgggtcatgatacagcccgccaagctcaccgtgccgggcgtcttccataagctg
aaggagattgcgctgatgacagggcatgcgtcccagaccaagaagatcgacatggttaag
ggcatgtatgtagcctgccgatactgtgaggccaagtatctcatccgctcgctcggtgga
aagctgcgcgtgggcttggcggaacagtcggtcttgcaggccatagcgcaggcatgtttc
ctcacccccccaggccaggactacccgcctgaggtcctggacgctggtgccggcaggagc
gcagagaaggtgaaggctgaggtggatgagtatgcgcttattctcaagacgacttattgc
gagttcccctcctacgacaagatcatccccgtgctgctgaaggaggggctgaaggagctg
cccaaccactgctgcctcacccccggcgtacccctgaagcccatgttggcgcatcccacg
acgggcgtctctgaggtgctcaagcgcttcgagaatgccaagttcacctgcgagtttaag
tacgacggagagcgagcgcagatccacctgaaggaagacgggaccatcaacatctacagc
cggaaccaggaagacaacacctccaagtacccggacatcatcgcgcgcttcaagaacgga
gtcggcaaggacgtcaagtcgtgcgtgatcgactcggaggcggtggcttacgacagggag
aagaagcgcatcctccccttccaagtcctgagcacgaggaaaaagaaggatgcgcacgag
agcgagatcacggtacaggtgtgtgtgttccccttcgacctgctgtacctcaatggggag
ccgctggtgcgcgagcctttcgagcggcgccggcagctgctgcgggagaacttcacggag
gttgagggcgagttcatgtttgcgcagagcatggacgccaccaacaccgaggacattgag
gagttcctggaggagtccattaaaggtaactgcgagggtctgatggtgaagacgctggac
gtggaggcaacgtacgagatagccaagcgctcccggaactggctcaagctgaagaaggat
tacctggacggggtgggcgacacaattgacgccgtggtcatcgggggttacctgggcaag
ggcaagagggcaggtaactatgggggcttcctgctggcctgctacgatgaggacaatgag
gagtaccagtcactgtgtaagattgggaccggcttcagcgaggaggatctggccaaacac
acggagttcttcaagcaacacctcatcgacaaacccaagtcctactacaggtttgacaat
gcagtggcgccggatcactggtttgacgcggtgcaggtgtgggagatcaaatgtgctgac
ctctccatctcccctgtgcacaaggccgcccagggcatcgtggataaggagaagggcatc
tcactcagattcccaaggtttttgcggatcagagaagacaagaccccagagaacgcaacc
tcagcctcacagatcgccgagctctacaggagtcaggaccaaatcaagaacagcaaggcg
gacaatgctggagatgaggaggacttctactaa

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