Eriocheir sinensis (Chinese mitten crab): 127010010
Help
Entry
127010010 CDS
T08870
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
esn
Eriocheir sinensis (Chinese mitten crab)
Brite
KEGG Orthology (KO) [BR:
esn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
esn03016
]
127010010
Enzymes [BR:
esn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127010010
Transfer RNA biogenesis [BR:
esn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127010010
Prokaryotic type
tRNA splicing ligases
127010010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
127010010
NCBI-ProteinID:
XP_050739670
LinkDB
All DBs
Position
4:complement(22676882..22685785)
Genome browser
AA seq
506 aa
AA seq
DB search
MVVRQYNEELKFLERLSPSCWRIKKGFQPNMNVEGIFYVNDHLEKLMFEELRNACRPGSI
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMDNPKAVVSPGGVGFD
INCGVRLLRTNLTEGDVTPIKERLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMAQADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDEIETNDRQLACARIK
SEEGQNYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFQMSPDDLDMHVIYDVSHNIAKIE
QHWIEGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
TETFGSTCHGAGRALSRAKSRRNLDYGDVLMKLQEQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgcggcagtataacgaggagctgaagttcctggagcgtctgtctcccagttgc
tggcgcatcaagaagggcttccaacccaacatgaacgtggaaggcatattctatgtcaat
gaccacttggagaagctgatgtttgaggagctgaggaacgcttgccggcctgggtcaatc
gggggcttcctgccaggcatgaagcagatagccaatgttgcagcacttcctggcattgtg
ggcaaatctgttggcctgccagatgtacactcaggctatgggtttgctattggtaacatg
gcagcctttgatatggacaacccaaaagctgtcgtctctcctggtggtgttggatttgat
attaactgtggagttcgtttgctgaggaccaacctcacagagggcgatgtcactcccatc
aaggagcgcttggctcagtcaatgtttgatcacattcctgtgggagttggctccaagggc
atcattcccatgacggcacgagacctggaggaggcactggaaatggggatggactggtcc
ctcagggaaggatacatctgggctgaagacaaggagcactgtgaagagtatggacgcatg
gcccaggctgatccagccaaagtttccatgagggccaagaagagaggtcttccccaattg
ggaaccctgggagctggaaaccactatgcagagattcaagtagtggatgaaatctatgat
aaatgggcagccagtaagatgggcattgaagagaagggacaagtgtgtgtgatgatccac
tctggctctcggggctttggtcaccaggtggctacagatgcccttgttgctatggagaag
gccatgaagagagatgaaattgaaactaatgatcggcagcttgcctgtgccaggatcaaa
tctgaagagggccagaactacctgaagtccatggctgcggcagccaactttgcctgggtc
aaccgctcctccatgactttcctcagtagacaggcatttgcaaaacagttccaaatgagc
ccagatgacttggacatgcacgtgatctacgacgtctcccacaatattgccaaaatcgag
cagcactggattgaaggaaaactacgcactcttctggtccataggaaaggttcaacaaga
gccttcccaccacaccacccactcatacctgtggattatcaactgactgggcagcctgtt
ttgatcggtggcacgatgggcacctgttcctatgtgctgacaggaactgagcaaggcatg
acggagaccttcggctccacttgtcacggagcgggccgggcactgtcccgagcaaagtct
cggcgaaatttagattacggcgatgtcttgatgaaactgcaagaacaaggaatcagcatc
cgagtggcttccccaaagctggtgatggaagaggctccagagtcatataagaatgtcact
gatgtagtagacacttgtcatgcagctggtattagtaagaaatgtatcaaattgagacca
atagctgttatcaaaggataa
DBGET
integrated database retrieval system
