Eriocheir sinensis (Chinese mitten crab): 127010040
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Entry
127010040 CDS
T08870
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
esn
Eriocheir sinensis (Chinese mitten crab)
Brite
KEGG Orthology (KO) [BR:
esn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esn03041
]
127010040
Enzymes [BR:
esn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127010040
Spliceosome [BR:
esn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127010040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_N
AAA_22
Ank_2
AAA_19
Ank_5
Ank
ATPase
Ank_3
nSTAND3
T2SSE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
127010040
NCBI-ProteinID:
XP_050739713
LinkDB
All DBs
Position
42:12889610..12912498
Genome browser
AA seq
1688 aa
AA seq
DB search
MSRRRGPNRRFNEAQVSEELKITIALALKKLTQNDEQKELELPSSLTSEERKYIHFLSQQ
MGFKSKSRGKGSSRYLTVYKKEGSTIMSKEALVTLAEQTRSTILSLLHRCPVTNKERQDL
LSATERDRLMNPELRDLSVLRSLGRLTPGPPQVPPPAAPSEVAAEARKLPVWGMREQLLA
AAHHNQVILVCGETGSGKTTQVPQMLLQEASSLGKPCRIFCTQPRRLSALTIAERVAAER
GEKVGYTVGYQIRLESKLSPKTLLTFCTNGVLLRTLMGGDSSLASVTHILVDEVHERDRF
TDFLLIVLRDCLPKFRHLKLILMSAALDVNLYAKYFNNCPVIDIPGRCYPVKEYFLEDVL
KYTTYQTAEMAKAARELEKRQSGLKTATAWTQQILGNVSAPSPILAPARLTSGGGGGGGG
AGHAFPSSASGGSSFTSPPPSSSQGHSSHSGSGSQGQGRPHEGNDDGDDDMDGSLRKEMD
NCIQEAFLSGSDEAFSQMMYLIMSENVSPDYQHSETWATPLMVAAGRGRVDVLEQLLALG
ASLTLRAANDWSAACWAKSTGQEEAIDLLRAYSACEGVDLPGITNINTKTNAQGGGVNGR
GGGVGGGAEVSAEDRKAVEAYHHSVSDDMVDIDLIHALCLKIHTAQAPGAILIFLPGYDD
IVTLRDRIIAEERHYLQGGKYCLFCLHSSMQSSDQKRVFRPSPAGVRKIILSTNIAETSV
TINDVVYVIDSGKVKEVSYDSTVGVSCLRAVWISQASSQQRRGRAGRCQPGICYHLFSRG
RYQSLLLYQTPEILRTPLQELCLHTKLLAPANMPIADFLARAPEAPTFIMIRSAVQLLKS
MDALDGWEDVTELGHHLLDLPLPPRLAKMVITATVLKCLDPVLTVAAALALKDPFMLPKH
PVEKRNASAIRRKFTSGTHSDHMVLLKAFQAWQKACTEGWERGWCERNYISGAAMEMIHG
MRSQVLAQLRGAGFVRARGPGDIRDVNSNSDNWAMVKAALVSGMYPNLIRVDRDQCQLRT
QKESKVRLHPTSALLDVGGAGGHSSLATAHRSLVASMPSDWLVYDEMVRIGVVAHVRTVT
LVSPLTVLLVAGPMRLPLDALSEPSSRNSGDCSSDSESEERPAGLSCLVRIDSWIQFLGD
PQAAHLALQLRHKLHALVLRRLRAPNKPLTQADEDVVRVVGAALSQEEQALNMVQPAGVG
QRPRPLYPHSHPHEGGWSVGTSDDSQSSHSSSRRTSDAATPPAPPQHPAASKYPTPASKL
PQSPTTNTPGGIMSPVFTQNSSASPASKMGPGATGGKFGVPFGGGKGPGGSSTPQPINKG
MVGMGVGPGKIGNKDVKGIYRNNNNNTNNNTTSTNHHQNKPNTNNNPPNTTTSTTNDNTN
TTTTTNTTSAGNTSGSIGAASGGSGGGVSGGKVRYFIIKASMYKQLEASHHTSLWAFTHS
TEKKILQACQGGQAGVFLVFTLHRGGQFNGYARFTGQRTDEKCPEITNVAPTLGPLYKVE
WMKKWNVGFHHTRRLYNPYNDNLQVHLSRDGQEVEPGIGEQLIRLWERGGPGGGGGSGGG
GNYKPNNSYMNSGGGGSGGGGGGNSGGASGGNTQGSGGGGGSGGGGGGQMMHEHPSSAHS
TQNRHPVHPPHMNQVHHPPFHHPPFNRNYGNGYNNYGGGGGGGGGGGGGGGGGGGGGYRG
NYRGGYRR
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtcggcgtggacccaatcggaggttcaacgaggcgcaggtcagcgaggaactc
aaaatcaccatcgcgctcgccttgaagaaactgacccagaatgacgagcagaaagagttg
gagcttccgtcctccctcacgtcagaggagaggaagtacattcactttttgtcgcagcag
atgggattcaagagtaagagcagaggcaaggggtcatctcgctacctcactgtgtacaag
aaggagggctccaccatcatgagcaaggaggcgctggtgacgctggccgagcagacgcgc
tccaccatcctctccctgctccaccgctgccccgtcaccaacaaagagcgccaggacctg
ctctccgccaccgagcgagacagactcatgaacccggagttgcgtgacctgagcgtgctg
aggtcactaggtcgcctcacacccgggccgccacaggtgcccccgccggccgccccgagc
gaggtggcggccgaggcgaggaagctgccagtgtgggggatgcgtgaacagctcctggcg
gccgctcaccacaaccaagtgatcctggtgtgcggcgagacgggctccgggaagactacg
caggtacctcagatgctgcttcaggaggcctcatcactcgggaagccctgtcggatattc
tgcacccagcctcgccgcctgtccgctctcaccattgccgagcgcgtggctgcagagcga
ggggaaaaagttggctacactgtcggctatcagatccgcctggagagcaaactgtcaccg
aagaccctgttaactttctgcaccaatggggtcttgctgcggaccttaatgggcggtgac
tcttccctggctagcgttacccatatcttggtggatgaggttcacgagagggatcgcttc
acggacttcctcctcatcgtgctccgtgactgtctgccaaagttccgtcacctcaagctc
atcctcatgtcggccgcgctggacgtcaacctctacgccaagtacttcaacaactgccct
gtgattgatattcccggtcgctgctaccctgtcaaggagtactttctggaggatgtgttg
aagtacaccacctaccagaccgcagagatggccaaggctgcccgggagctcgagaaacgg
cagagcggattaaaaactgcgacggcttggacgcagcaaatccttggcaatgtgtccgcc
ccttcacccatccttgcccccgccaggctgaccagcggcggaggtggcgggggaggcggg
gcgggtcatgcgttcccgtcctctgcctccggggggtcaagtttcacctcccccccgccc
tcatcgtcgcagggtcattcctctcattcggggtctgggtcgcaaggtcaaggtcgccca
catgaaggtaatgatgatggtgatgatgatatggacggcagcttgcggaaggagatggac
aactgcattcaggaggcctttctgtcagggtcggacgaggcgttctcgcagatgatgtac
ttgattatgtccgagaacgtgtcccccgattaccagcactccgagacgtgggccacaccg
ctgatggtggccgcagggaggggccgagtggacgtcttagaacagctgctggccctgggt
gcgtccctgaccctacgcgcggccaatgactggtccgcggcgtgttgggccaagtcaacg
ggccaggaggaagccattgacctcctgcgggcttatagtgcttgcgagggggttgactta
ccagggatcacaaacatcaacaccaagaccaacgcccagggtggtggtgttaatggtcgc
gggggtggtgttggtggtggtgcggaggtgagcgcggaggatcggaaggcggtggaggcg
tatcatcactccgtatccgacgacatggtggatattgacttgatccacgcgctgtgtttg
aagatccacacggcgcaggccccgggtgccatcctcatcttcctgccggggtatgacgac
atagtgacactgagggacaggatcatcgcagaggagagacactacctacagggcgggaaa
tactgcctcttctgcctacactccagcatgcaatccagcgaccagaagagagtgttccgc
ccctcacccgccggcgtgcgcaagatcatcctctcaaccaacatcgccgagaccagtgtg
acgataaatgatgtggtgtatgtgattgacagcggaaaggtgaaggaggtcagttacgac
agcacggtgggggtatcgtgtctccgagcggtgtggatatcccaagcgtcgagtcaacag
aggcgggggagggcgggtcgttgccagcccgggatatgctaccacctgttctcccggggc
cgctaccagtccctgctcctctatcagaccccggagatactgcgcacgcctctgcaggag
ttatgtctgcacaccaagctcctcgccccggccaacatgcccatcgcagacttcctggca
cgtgcccctgaggccccgacctttatcatgattcgcagcgccgtccagctcctcaagagc
atggacgcgctggacggctgggaggacgtgacagagcttggccaccacctcctggacctt
cccctgccgccgcgcctcgccaagatggtcatcaccgccactgtgctcaaatgccttgac
cctgtgctcaccgtcgctgctgccctggccctcaaggacccattcatgctgcccaaacac
ccagtggagaagaggaacgcaagtgccattagacgcaagttcacctccggcacccacagc
gaccacatggtattgctcaaggctttccaggcatggcagaaggcgtgcacggagggatgg
gagagaggctggtgtgagaggaactacatctccggggctgccatggagatgattcacggg
atgcgctcacaggtcctggctcagctgaggggcgctgggttcgtcagagcacgtggaccg
ggcgatataagggacgtcaacagcaacagcgacaactgggccatggtgaaggcagcgctg
gtgtcaggaatgtacccaaacctgataagggttgaccgagaccaatgccaacttaggaca
cagaaagaaagcaaagtccgtctacacccaacatccgcccttcttgacgtgggtggtgcg
ggcggccactcctccctcgccacggcccaccgctctctggtcgcctccatgccctcggac
tggctggtgtacgacgagatggtgcgcattggggtggtggctcacgtgcgcaccgtcacc
ctggtctcgcctctgacggttcttctagtagcgggtccaatgcggttgcctctggacgca
ctttccgagccgtcaagtcgcaacagcggagactgcagcagcgacagcgagagtgaggag
cgcccggctggcctctcgtgcttggtgaggatagacagctggattcagttcctcggagac
ccccaagccgcacatctcgccctccagctaaggcataagcttcacgcccttgtcctgcgt
cgcctcagagccccgaacaagccccttacgcaggcggatgaggacgtggtgcgtgtggtg
ggtgcagcgctgagccaagaggagcaggccctgaacatggtgcagccggcaggtgtgggc
cagcgaccacgcccactatacccacacagccacccccatgaaggcggatggtcagttggc
acatcggatgactcgcaatccagccactcatcctccaggcgtaccagcgatgcagccact
cccccagcacccccccagcatccggcagcatccaagtaccccacacccgcctccaagctc
ccccagtcacccacgaccaacacacccgggggaatcatgtcacccgtcttcacccagaac
tcatccgcatcacccgcctcgaaaatgggtccgggtgccactgggggaaagtttggggtg
cccttcggcgggggaaaggggcccgggggaagctccacaccccagccgattaacaagggg
atggtcgggatgggtgtcggccccggcaagattgggaacaaggatgtgaagggcatctac
cgcaacaacaacaacaacacaaacaacaacaccaccagcaccaaccaccaccaaaacaaa
ccaaacacaaacaacaacccgcccaacaccaccaccagcaccaccaacgacaacaccaac
accaccaccaccaccaacaccacctctgccggcaacaccagtggaagcataggcgctgcg
agtgggggctctggcggtggtgtgtctgggggcaaggtgcggtacttcatcatcaaggcg
tcaatgtataagcagttggaggcatcgcaccacacctcactctgggccttcacgcacagc
accgagaagaagatattgcaagcgtgtcagggagggcaggcgggtgtgttcctcgtgttc
acccttcaccgcgggggacagttcaatggttacgcgaggttcaccggccagcgcacggat
gagaagtgtccggagatcaccaatgttgcccccacgctcggccctctgtacaaggtggag
tggatgaagaagtggaatgttggcttccaccacacgcgtcgcctctacaacccctacaac
gacaacctgcaagtccacctgagccgcgacggacaggaggtggagccaggcatcggggag
cagctcatccgcctgtgggagcgaggcggaccaggcggaggaggtggaagtggaggagga
ggaaactacaaacccaataacagctacatgaactcaggtggaggaggaagtggaggagga
ggaggagggaacagtggaggtgcaagtggaggaaatactcaaggaagcggaggaggagga
ggaagtggaggtggtggaggaggtcaaatgatgcacgaacacccctcatccgctcactcc
acccagaacagacatccggttcatccacctcacatgaatcaagtccaccatccgcctttc
caccatccgcccttcaaccgaaactacggaaacggatacaacaactatggtgggggtgga
ggtggaggtggtggtggaggtggtggaggtggtggtggaggaggtggagggtacaggggg
aactacagaggtggatataggaggtag
DBGET
integrated database retrieval system
