Escherichia coli O104 H4 2009EL-2071 (EAEC): O3O_00540
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Entry
O3O_00540 CDS
T02256
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
eso
Escherichia coli O104:H4 2009EL-2071 (EAEC)
Pathway
eso03420
Nucleotide excision repair
eso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O3O_00540 (uvrD)
03430 Mismatch repair
O3O_00540 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eso03400
]
O3O_00540 (uvrD)
Enzymes [BR:
eso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O3O_00540 (uvrD)
DNA repair and recombination proteins [BR:
eso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O3O_00540 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
O3O_00540 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFS83901
LinkDB
All DBs
Position
complement(5188909..5191071)
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AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLESV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagccttaatgacaaacagcgcgaagcggtggccgcg
ccacgcagcaaccttctggtgctggcgggcgcgggcagtggtaagacgcgcgtactggtg
catcgtatcgcctggctgatgagcgtggaaaactgctcgccatactcgattatggcggtg
acgtttaccaacaaagcggcggcggagatgcgtcatcgtatcgggcaactgatgggcacc
agccagggcggcatgtgggtcggcaccttccacgggctggcgcaccgcctgctgcgtgcg
caccatatggacgccaatctgccgcaggatttccagatcctcgatagcgaggaccagctg
cgcctgcttaagcgtctgatcaaagccatgaacctcgacgagaagcagtggccgccgcgc
caggcaatgtggtacatcaacagccagaaagatgaaggcctgcgtccgcatcatattcaa
agctacggtaatccggtggagcagacctggcagaaggtgtatcaggcgtatcaggaagcg
tgtgaccgcgcgggcctggtggacttcgccgagctgctgctgcgcgctcacgaactgtgg
cttaacaagccgcatatcctacaacactaccgcgaacgttttaccaatatcctggtggac
gaattccaggataccaacaacattcagtacgcgtggatccgcctgctggcgggcgacacc
ggcaaagtgatgattgtcggtgatgacgaccagtcaatctacggctggcgcggggcgcag
gtggagaatattcagcgtttccttaatgatttccccggtgccgaaactattcgtctggag
caaaactaccgctctaccagcaatattctgagcgccgctaacgccctgattgaaaacaat
aacgggcgtctgggtaaaaaactgtggaccgatggcgcggacggtgagcctatttccctc
tattgcgcttttaacgaactcgatgaagcgcgttttgtggttaaccgcatcaaaacctgg
caggacaacggcggggcgcttgccgagtgcgccattctctaccgcagtaacgcccagtcg
cgtgtactggaagaagcactgttgcaggccagtatgccgtaccgtatttacggcgggatg
cgcttcttcgaacgccaggaaatcaaagacgcgctctcgtatctgcgtctgattgccaac
cgtaacgacgacgcggcgtttgagcgcgtggtgaatacgccaacgcggggtattggtgac
cggacgctggacgtggtacgtcagacatcgcgcgatcgccagttaacactctggcaggca
tgtcgtgaactgttgcaggaaaaagccctcgccgggcgagctgccagcgccttgcagcga
tttatggaattaatcgatgccttagcgcaagaaactgccgatatgccgctgcatgtacag
actgaccgggtaattaaagactccggcctgcgcaccatgtacgagcaggagaagggcgaa
aaaggccagacgcgtatcgaaaacttagaggaactggtgacggcaacgcgccagttcagc
tacaacgaagaagatgaagatttaatgccgctgcaggcattcctctcccatgcggcgctg
gaagcgggcgaggggcaggcggatacctggcaggatgcagtgcagttgatgacgctgcac
tcggcgaaaggcctggagttcccgcaggtgtttattgtcggtatggaagagggtatgttc
ccaagccagatgtcgctggatgaaggcgggcgtctggaagaagaacgccgtctggcctac
gttggtgtaacccgcgcgatgcagaaactgacgctgacctacgcggaaacccgccgtctg
tatggtaaagaggtttaccatcgcccgtcgcgctttatcggcgagctgccggaagagtgt
gtggaagaggtgcgcctgcgcgctacggtaagtcgtccggtcagccatcaacggatgggg
acgccgatggtcgagaacgacagcggctacaagctcggtcagcgtgtacgccacgctaag
tttggtgaaggcaccatcgtcaatatggaaggcagcggcgagcatagccgtttgcaggtg
gcattccagggccagggtattaaatggctggtggcggcatacgcccggctggagtcggtg
taa
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