Etheostoma spectabile (orangethroat darter): 116669489
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Entry
116669489 CDS
T08457
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04382
Cornified envelope formation
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116669489 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116669489 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116669489 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116669489 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116669489 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116669489 (col4a5)
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116669489 (col4a5)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116669489 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116669489
NCBI-ProteinID:
XP_032355268
LinkDB
All DBs
Position
19:complement(11198252..11280931)
Genome browser
AA seq
1691 aa
AA seq
DB search
MNRDLKSLRHLAVPLLFLALSVAVQRADSAACHGCVGSKCDCSGAKGDKGERGFPGLTGQ
PGVPGFPGPEGPIGARGEKGSDGAQGPTGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGLAGCNGTKGERGFPGSSGIPGQQGRPGPPGLPGQKGDPGDVISTNRFGETGAVGLPGL
PGATGAPGPTGLQGPVGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGERGDTGMPGPP
GPPGQVGEQKKPPETEIQRGDKGDPGLPGSPGDRGFPGPPGPEGGQKGDKGEPGEPGKRG
KPGKDGDPGTPGYPGPKGDSGLPGPPGRDGERGFKGDQGYPGPPGVVIGGPTVGRVGPKG
EPGFPGTPGSKGDRGLPGLSGPPGPPGLSAIGGTGPPGPPGFPGERGQKGDLGPPGLSLP
GSPGRPGSPGGQGQPGPPGAPGFSTPGQICIPGEPGRPGVQGETGYPGETGQKGEKGDTC
VNCFGSTSGIPGPPGPPGQPGFPGTPGSPGIKGDRGFSGTPGAVGPPGRPGPQGSPGFPG
GKGDPGDVITVNGLRGEKGDTGFPGSPGLPGLDGRPGRDGQQGSPGPKGAPGSLLVKGER
GSPGEPGLSGIPGDRGPPGSPGYGPPGPNGEKGSQGVSGRPGGPGAPGAKGEPGLTVADK
GLPGPRGPEGEPGLPGSPGSPGQPGQTGFPGSPGSKGDPGLPGIGLPGPPGAKGFPGIPG
QPGAPAAPGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGLPGVPGAKGFTGPKGDPGFPGG
PGSPGRSGFDGSPGLKGDAGTPGTPGARGPPGSPTIGSLGAQGPPGPPGPMGPPGEKGFP
GSNGEKGDPGPPGLDIPGLPGDRGTPGFPGSPGPVGTPGPPGGPGRDGLPGLPGLKGDMG
PMGSPGPSGESGRPGGPGGPGPKGEPGFPGRDGGPGGPGAKGDKGDAGIQGPPGTIDPSQ
ILKGQKGEPGLSGGPGFSGQKGIAGLPGDSGLPGSDGRPGLPGPPGPKGDPGIPGGPGGP
GLSGAKGGMGEMGFPGPSGQKGLPGQPGRPGSPGQPGGPGFPGAKGEPGSAGVGPPGLSG
PKGEPGQPGFQGNSGLKGTAGSPGLPGLPGGPGPKGDSGIPGLQGPPGIPGPKGLDGGPG
TPGSTGAPGRPGESGRPGGPGLPGDKGQAGRDGIPGPAGIKGDPGLPGYGGPGAPGLPGL
PGSKGDAGLPGPSGSPGFPGTKGETGFPGSPGLPGNIGPPGPPGRALLGPKGSQGPPGPP
GRAGPAGPPGAPGPEGPRGPSGLGGVKGEKGIPGAPGQPGFAGQKGESGIPGFPGPSGLP
GSPGLKGDIGLPGVPGFPGQKGDQGLPGATGLPGDPGDTGDTGPPGDSGIAAAPIYVKGE
RGPPGVQGQPGGRGQPGSPGREGLPGQPGAPGDAGPEGPPGFSGPPGRKGDNGPAGQPGQ
RGYPGPPGSDGPQGLPGPPGSVSAAHGFLITRHSQAQEVPFCPEGTSLIYDGYSLLYVQG
NERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITG
EGIKPFISRCAVCEAPAMVIAVHSQTIQIPSCPSNWEALWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQAETLKAGNLRTR
VSRCVVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaacagagacttgaagagcctgcgccacctcgccgtgcctctgctcttcctcgcgctg
agcgtcgcggtgcagcgagccgactccgcggcttgccatggatgtgtggggtctaaatgt
gactgcagcggagcgaaaggagataagggcgagcggggctttccaggtctcacgggacag
ccaggagtccccgggttccccggaccggaggggccgatcggagccagaggagagaagggc
agtgatggagctcaaggaccaactggtccaaaaggaataagagggccgtctggactgcca
ggatttccaggaacgcctggacttccaggtctgcccgggcaggacggacccccaggcccc
agaggattggcgggatgcaacggtacaaagggtgaaaggggtttcccaggaagttcagga
atccccggacagcaaggacggccgggtccacctggtctgccgggacaaaagggcgacccg
ggtgatgtgatctccaccaatcgttttggagagacaggagcagtcggattgcccggatta
cctggagctactggagctcccggtcccaccggtttgcaaggtccagtcggccctccggga
cccagaggctatgagggtcgtccaggtcccccaggacctcccggaccaaaagggaacatg
ggattgaacttccaaggacccaaaggagagaggggtgacactggtatgccaggacctcct
ggtcctcctgggcaggtcggagaacagaagaagccacctgagacggagattcagagagga
gacaagggtgatccaggtcttccaggttccccaggtgaccgaggctttccaggacctcct
ggtcccgagggtggccagaaaggagacaagggagaaccaggagaaccaggcaaacgaggc
aaaccaggcaaagatggcgatcccgggactccaggctaccccgggcccaagggagactca
ggcttgccaggtcctccaggcagggatggagagagaggatttaaaggggatcaaggatac
ccaggcccaccaggagtggtgatcggcgggccgacggtgggtcgggtcggccctaagggc
gagccagggttccccggcaccccggggagcaaaggagacagaggactaccaggtttgtca
ggacctccaggacctccgggactttcagctatcggtggtaccggtccacccggcccccca
ggcttccccggagagagaggtcagaagggggaccttggcccaccaggcctgtctttgcca
ggttccccagggcgtccagggtctcctggtggccagggtcaaccggggccccccggggct
cctggcttttccacaccagggcaaatctgcattccaggcgagcccgggcgtcccggggtg
cagggagagacgggttatccaggggagacgggccagaaaggtgagaaaggcgacacctgt
gtgaactgctttggcagcaccagcggcatcccaggacccccaggacctcccggacagccc
ggattccctggaacccctggctccccgggtatcaaaggagacagaggattttcaggaaca
cctggtgccgttggaccgcctggtcgccctggtcctcaaggttctccagggttccccgga
ggaaagggagacccaggcgatgtcattacagtcaacggcttgcggggagagaaaggggac
actggattcccgggatccccagggctccccggtctggacggtcggcccggtcgcgatgga
cagcaaggatctccgggacccaaaggagctcctggctctctgctggtgaaaggagaacga
ggcagccctggtgagccaggtctttcaggtattccaggagacaggggtcctccagggagc
cctggctacggacctccaggacctaacggagagaaaggtagccagggcgtctcgggaaga
cctggaggtccgggtgcacccggtgctaaaggagaaccgggcctgacggtggctgacaaa
ggcttaccaggacccagaggaccggagggcgagcccggactgcctggctcaccaggtagc
ccgggtcagcccggacagactggtttccctgggtcaccaggatcgaagggtgaccctgga
ctcccaggcatcggactcccaggaccccccggagctaaaggattcccaggtatccctggc
cagccaggagctccagcagcaccgggcagaccaggagtagacggactccctggccagcct
ggatttcctggacccaagggcgagcctggctttggcctccctggccccccaggtttacca
ggagtacctggagctaaaggtttcaccggaccaaagggagatcccggtttccccggcggc
cccggctcacctggtcgatctggatttgatggctctccaggactgaaaggtgacgccggt
acacccggtacacccggagctcgtggtccccccggatcccccaccattggctcactgggg
gctcaaggcccccctggaccccctggaccaatgggacccccaggcgagaaaggattccct
ggatcaaacggagagaagggagaccctggccccccaggtctagatattccaggtctgcca
ggagacagaggaactcccggtttcccaggttccccgggaccagttggaactccaggaccc
cctggaggacctggacgggacggcctgcctggactgccaggtcttaaaggagacatgggc
cccatgggatctccaggaccttctggagaatcaggaagaccaggaggacccggcggtcca
ggacctaaaggtgaacctggattcccaggccgagacggtggacccggcggccccggtgct
aaaggagataaaggagatgccggcatccagggacccccaggaaccattgacccctcacag
attctgaagggacagaaaggagaacctggactgtcaggtggaccaggattttcaggtcag
aaaggcatcgccggtctccctggtgattccgggctaccaggatcagatggacgacccgga
ctccccggaccaccaggtcccaaaggagatcccggcatcccaggaggccctggaggtcct
gggctttcaggagctaagggcggaatgggagaaatgggatttccaggtccgtcagggcag
aagggtctaccaggtcagccaggtcggcctggatccccgggacagccaggaggacccggt
ttccctggggccaaaggtgaaccaggctctgctggagtcggaccaccgggattgtctgga
cccaagggtgaaccaggtcagccaggtttccaaggaaattcaggactgaaaggaactgca
ggatcccccggtctcccagggttaccaggagggcctggtcccaaaggcgacagcggaatc
ccaggactacaaggacctccgggtatccccggtcccaagggtctcgacggagggcctggt
acaccgggttccaccggagctcccggtagaccaggagagtccggccgaccaggaggacca
gggttgccaggagacaagggtcaggcaggtcgggacgggatcccaggaccggctggaatc
aaaggagaccccgggcttcctggttacggcggacccggtgctccggggcttccagggttg
ccaggctcaaagggagacgccggtctccctggcccctctggcagtcctggtttccccggc
actaaaggagaaaccggcttccccggctcccctggccttcccggcaacatcggacctcct
gggcccccgggtcgggctctgctgggtcccaaaggatcacaaggaccccctgggcctccc
ggtcgagcaggtcccgcaggtcctccaggtgcacctggccccgaggggccccgcgggccc
tcagggctcggcggcgtgaagggagagaaggggatccccggcgctcccggccagccgggc
ttcgccggacagaagggagaaagcggcattcccggattcccgggtccctctggtcttccc
ggttctcctggtttgaagggagacatcggtctgcccggcgttcctggattccctggacaa
aagggagaccagggactccccggtgccaccggccttcctggagatcctggagacaccgga
gataccggccctcctggcgactccggcattgccgcggctcccatctatgtgaagggagag
cgaggaccccccggtgttcagggccagcctggtggtcggggacaacccggctctcctggg
cgtgaaggacttccgggtcagcccggtgcccccggcgatgctggtcccgagggtcctccc
ggcttcagcggcccgcccggcaggaagggagacaacggcccggccggtcagcctggtcag
cgtggctaccctggtccccccggttccgacggtccacagggtctccccggtccaccggga
tccgtctccgctgcccacggcttcctcatcacccgacacagccaggcccaggaagtgccc
ttctgccccgaaggaaccagcctcatctacgacggctactccctgctgtacgtgcagggc
aacgagagggcccacggacaggacctcggcacggccggcagctgtctgcgccggttcagc
accatgcccttcatgttctgcaacatcaacaacgtctgcaacttcgcctcccgcaacgac
tactcctactggctgtccacgcccgagcccatgcccatgtccatggcccccatcaccgga
gagggcatcaagcccttcatcagcaggtgtgcggtgtgtgaagccccagccatggtgatc
gcagtccacagtcagaccatccagattccctcttgcccttcaaattgggaagctctgtgg
atagggtactccttcatgatgcacaccagtgcgggtgcagagggctccggtcaggccctg
gcctcccccgggtcctgcctggaggagtttcgcagcgcccccttcatagagtgccacggc
agagggacgtgcaactactacggcaactcctacagcttctggctggccaccgtggagcaa
tcggagatgttcaggaagccccaggcggagactctgaaggcgggtaacttacgaacgcgc
gtcagccgttgcgtggtctgcatgaagaggacgtaa
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