Etheostoma spectabile (orangethroat darter): 116669489
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Entry
116669489 CDS
T08457
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116669489 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116669489 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116669489 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116669489 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116669489 (col4a5)
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116669489 (col4a5)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116669489 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116669489
NCBI-ProteinID:
XP_032355268
LinkDB
All DBs
Position
19:complement(11198252..11280931)
Genome browser
AA seq
1691 aa
AA seq
DB search
MNRDLKSLRHLAVPLLFLALSVAVQRADSAACHGCVGSKCDCSGAKGDKGERGFPGLTGQ
PGVPGFPGPEGPIGARGEKGSDGAQGPTGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGLAGCNGTKGERGFPGSSGIPGQQGRPGPPGLPGQKGDPGDVISTNRFGETGAVGLPGL
PGATGAPGPTGLQGPVGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGERGDTGMPGPP
GPPGQVGEQKKPPETEIQRGDKGDPGLPGSPGDRGFPGPPGPEGGQKGDKGEPGEPGKRG
KPGKDGDPGTPGYPGPKGDSGLPGPPGRDGERGFKGDQGYPGPPGVVIGGPTVGRVGPKG
EPGFPGTPGSKGDRGLPGLSGPPGPPGLSAIGGTGPPGPPGFPGERGQKGDLGPPGLSLP
GSPGRPGSPGGQGQPGPPGAPGFSTPGQICIPGEPGRPGVQGETGYPGETGQKGEKGDTC
VNCFGSTSGIPGPPGPPGQPGFPGTPGSPGIKGDRGFSGTPGAVGPPGRPGPQGSPGFPG
GKGDPGDVITVNGLRGEKGDTGFPGSPGLPGLDGRPGRDGQQGSPGPKGAPGSLLVKGER
GSPGEPGLSGIPGDRGPPGSPGYGPPGPNGEKGSQGVSGRPGGPGAPGAKGEPGLTVADK
GLPGPRGPEGEPGLPGSPGSPGQPGQTGFPGSPGSKGDPGLPGIGLPGPPGAKGFPGIPG
QPGAPAAPGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGLPGVPGAKGFTGPKGDPGFPGG
PGSPGRSGFDGSPGLKGDAGTPGTPGARGPPGSPTIGSLGAQGPPGPPGPMGPPGEKGFP
GSNGEKGDPGPPGLDIPGLPGDRGTPGFPGSPGPVGTPGPPGGPGRDGLPGLPGLKGDMG
PMGSPGPSGESGRPGGPGGPGPKGEPGFPGRDGGPGGPGAKGDKGDAGIQGPPGTIDPSQ
ILKGQKGEPGLSGGPGFSGQKGIAGLPGDSGLPGSDGRPGLPGPPGPKGDPGIPGGPGGP
GLSGAKGGMGEMGFPGPSGQKGLPGQPGRPGSPGQPGGPGFPGAKGEPGSAGVGPPGLSG
PKGEPGQPGFQGNSGLKGTAGSPGLPGLPGGPGPKGDSGIPGLQGPPGIPGPKGLDGGPG
TPGSTGAPGRPGESGRPGGPGLPGDKGQAGRDGIPGPAGIKGDPGLPGYGGPGAPGLPGL
PGSKGDAGLPGPSGSPGFPGTKGETGFPGSPGLPGNIGPPGPPGRALLGPKGSQGPPGPP
GRAGPAGPPGAPGPEGPRGPSGLGGVKGEKGIPGAPGQPGFAGQKGESGIPGFPGPSGLP
GSPGLKGDIGLPGVPGFPGQKGDQGLPGATGLPGDPGDTGDTGPPGDSGIAAAPIYVKGE
RGPPGVQGQPGGRGQPGSPGREGLPGQPGAPGDAGPEGPPGFSGPPGRKGDNGPAGQPGQ
RGYPGPPGSDGPQGLPGPPGSVSAAHGFLITRHSQAQEVPFCPEGTSLIYDGYSLLYVQG
NERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITG
EGIKPFISRCAVCEAPAMVIAVHSQTIQIPSCPSNWEALWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQAETLKAGNLRTR
VSRCVVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaacagagacttgaagagcctgcgccacctcgccgtgcctctgctcttcctcgcgctg
agcgtcgcggtgcagcgagccgactccgcggcttgccatggatgtgtggggtctaaatgt
gactgcagcggagcgaaaggagataagggcgagcggggctttccaggtctcacgggacag
ccaggagtccccgggttccccggaccggaggggccgatcggagccagaggagagaagggc
agtgatggagctcaaggaccaactggtccaaaaggaataagagggccgtctggactgcca
ggatttccaggaacgcctggacttccaggtctgcccgggcaggacggacccccaggcccc
agaggattggcgggatgcaacggtacaaagggtgaaaggggtttcccaggaagttcagga
atccccggacagcaaggacggccgggtccacctggtctgccgggacaaaagggcgacccg
ggtgatgtgatctccaccaatcgttttggagagacaggagcagtcggattgcccggatta
cctggagctactggagctcccggtcccaccggtttgcaaggtccagtcggccctccggga
cccagaggctatgagggtcgtccaggtcccccaggacctcccggaccaaaagggaacatg
ggattgaacttccaaggacccaaaggagagaggggtgacactggtatgccaggacctcct
ggtcctcctgggcaggtcggagaacagaagaagccacctgagacggagattcagagagga
gacaagggtgatccaggtcttccaggttccccaggtgaccgaggctttccaggacctcct
ggtcccgagggtggccagaaaggagacaagggagaaccaggagaaccaggcaaacgaggc
aaaccaggcaaagatggcgatcccgggactccaggctaccccgggcccaagggagactca
ggcttgccaggtcctccaggcagggatggagagagaggatttaaaggggatcaaggatac
ccaggcccaccaggagtggtgatcggcgggccgacggtgggtcgggtcggccctaagggc
gagccagggttccccggcaccccggggagcaaaggagacagaggactaccaggtttgtca
ggacctccaggacctccgggactttcagctatcggtggtaccggtccacccggcccccca
ggcttccccggagagagaggtcagaagggggaccttggcccaccaggcctgtctttgcca
ggttccccagggcgtccagggtctcctggtggccagggtcaaccggggccccccggggct
cctggcttttccacaccagggcaaatctgcattccaggcgagcccgggcgtcccggggtg
cagggagagacgggttatccaggggagacgggccagaaaggtgagaaaggcgacacctgt
gtgaactgctttggcagcaccagcggcatcccaggacccccaggacctcccggacagccc
ggattccctggaacccctggctccccgggtatcaaaggagacagaggattttcaggaaca
cctggtgccgttggaccgcctggtcgccctggtcctcaaggttctccagggttccccgga
ggaaagggagacccaggcgatgtcattacagtcaacggcttgcggggagagaaaggggac
actggattcccgggatccccagggctccccggtctggacggtcggcccggtcgcgatgga
cagcaaggatctccgggacccaaaggagctcctggctctctgctggtgaaaggagaacga
ggcagccctggtgagccaggtctttcaggtattccaggagacaggggtcctccagggagc
cctggctacggacctccaggacctaacggagagaaaggtagccagggcgtctcgggaaga
cctggaggtccgggtgcacccggtgctaaaggagaaccgggcctgacggtggctgacaaa
ggcttaccaggacccagaggaccggagggcgagcccggactgcctggctcaccaggtagc
ccgggtcagcccggacagactggtttccctgggtcaccaggatcgaagggtgaccctgga
ctcccaggcatcggactcccaggaccccccggagctaaaggattcccaggtatccctggc
cagccaggagctccagcagcaccgggcagaccaggagtagacggactccctggccagcct
ggatttcctggacccaagggcgagcctggctttggcctccctggccccccaggtttacca
ggagtacctggagctaaaggtttcaccggaccaaagggagatcccggtttccccggcggc
cccggctcacctggtcgatctggatttgatggctctccaggactgaaaggtgacgccggt
acacccggtacacccggagctcgtggtccccccggatcccccaccattggctcactgggg
gctcaaggcccccctggaccccctggaccaatgggacccccaggcgagaaaggattccct
ggatcaaacggagagaagggagaccctggccccccaggtctagatattccaggtctgcca
ggagacagaggaactcccggtttcccaggttccccgggaccagttggaactccaggaccc
cctggaggacctggacgggacggcctgcctggactgccaggtcttaaaggagacatgggc
cccatgggatctccaggaccttctggagaatcaggaagaccaggaggacccggcggtcca
ggacctaaaggtgaacctggattcccaggccgagacggtggacccggcggccccggtgct
aaaggagataaaggagatgccggcatccagggacccccaggaaccattgacccctcacag
attctgaagggacagaaaggagaacctggactgtcaggtggaccaggattttcaggtcag
aaaggcatcgccggtctccctggtgattccgggctaccaggatcagatggacgacccgga
ctccccggaccaccaggtcccaaaggagatcccggcatcccaggaggccctggaggtcct
gggctttcaggagctaagggcggaatgggagaaatgggatttccaggtccgtcagggcag
aagggtctaccaggtcagccaggtcggcctggatccccgggacagccaggaggacccggt
ttccctggggccaaaggtgaaccaggctctgctggagtcggaccaccgggattgtctgga
cccaagggtgaaccaggtcagccaggtttccaaggaaattcaggactgaaaggaactgca
ggatcccccggtctcccagggttaccaggagggcctggtcccaaaggcgacagcggaatc
ccaggactacaaggacctccgggtatccccggtcccaagggtctcgacggagggcctggt
acaccgggttccaccggagctcccggtagaccaggagagtccggccgaccaggaggacca
gggttgccaggagacaagggtcaggcaggtcgggacgggatcccaggaccggctggaatc
aaaggagaccccgggcttcctggttacggcggacccggtgctccggggcttccagggttg
ccaggctcaaagggagacgccggtctccctggcccctctggcagtcctggtttccccggc
actaaaggagaaaccggcttccccggctcccctggccttcccggcaacatcggacctcct
gggcccccgggtcgggctctgctgggtcccaaaggatcacaaggaccccctgggcctccc
ggtcgagcaggtcccgcaggtcctccaggtgcacctggccccgaggggccccgcgggccc
tcagggctcggcggcgtgaagggagagaaggggatccccggcgctcccggccagccgggc
ttcgccggacagaagggagaaagcggcattcccggattcccgggtccctctggtcttccc
ggttctcctggtttgaagggagacatcggtctgcccggcgttcctggattccctggacaa
aagggagaccagggactccccggtgccaccggccttcctggagatcctggagacaccgga
gataccggccctcctggcgactccggcattgccgcggctcccatctatgtgaagggagag
cgaggaccccccggtgttcagggccagcctggtggtcggggacaacccggctctcctggg
cgtgaaggacttccgggtcagcccggtgcccccggcgatgctggtcccgagggtcctccc
ggcttcagcggcccgcccggcaggaagggagacaacggcccggccggtcagcctggtcag
cgtggctaccctggtccccccggttccgacggtccacagggtctccccggtccaccggga
tccgtctccgctgcccacggcttcctcatcacccgacacagccaggcccaggaagtgccc
ttctgccccgaaggaaccagcctcatctacgacggctactccctgctgtacgtgcagggc
aacgagagggcccacggacaggacctcggcacggccggcagctgtctgcgccggttcagc
accatgcccttcatgttctgcaacatcaacaacgtctgcaacttcgcctcccgcaacgac
tactcctactggctgtccacgcccgagcccatgcccatgtccatggcccccatcaccgga
gagggcatcaagcccttcatcagcaggtgtgcggtgtgtgaagccccagccatggtgatc
gcagtccacagtcagaccatccagattccctcttgcccttcaaattgggaagctctgtgg
atagggtactccttcatgatgcacaccagtgcgggtgcagagggctccggtcaggccctg
gcctcccccgggtcctgcctggaggagtttcgcagcgcccccttcatagagtgccacggc
agagggacgtgcaactactacggcaactcctacagcttctggctggccaccgtggagcaa
tcggagatgttcaggaagccccaggcggagactctgaaggcgggtaacttacgaacgcgc
gtcagccgttgcgtggtctgcatgaagaggacgtaa
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integrated database retrieval system
