Etheostoma spectabile (orangethroat darter): 116669610
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Entry
116669610 CDS
T08457
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04137
Mitophagy - animal
esp04140
Autophagy - animal
esp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116669610 (hif1a)
04137 Mitophagy - animal
116669610 (hif1a)
04148 Efferocytosis
116669610 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
esp03000
]
116669610 (hif1a)
Transcription factors [BR:
esp03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
116669610 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
116669610
NCBI-ProteinID:
XP_032355420
LinkDB
All DBs
Position
20:complement(9473429..9489213)
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AA seq
749 aa
AA seq
DB search
MDTGIVPEKKRVSSERRKEKSRDAARSRRGKESEVFYELAQQLPLPHSVSSSLDKASIMR
LIISYLRMRKLLSTAEPRAEEETELDTQLNSSYTKALEGFLMVLAEDGDMIYLSENVNKC
LGLAQFDLTGHSVFDFIHPCDQDELREMLVYKTGPKKAKESNTERNFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVYDSHTEETPNGHKEPPVPYLVLICDPIQHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILSLEQIEDV
KPVKEEEKAVVESSQPDMSPTLPKDEEKGPELDVIKLFTQAVEAQPLASLYDQLKEEPEA
LTLLAPAAGDAIISLDFSCPDSEIQLLKEVPVYNDVMLPSTSDNVALPLYPLLPGEPLHV
TTTSSEDAKAKSYAPATSPTSTSQSSTEADSPLDFCFPMDSEMSSDFKLDLVEKLFAIDT
EPKTPFNTQAMEDLDLEMLAPYIPMDDDFQLRSLSPEELLSGGPVKSLESSPVHVTQDIH
SYPSSPFNAPGSHTASPAPLNAPNPAIVVAKRTPQLDKEVSLRTLAAQNAQRKRKLGDLI
EMIEQGTLPQEEVEQGKKLRASDSGTTRTILLLPSDMASRLLGSTSEGTSSLFTLPQLTR
YDCEVNAPLQGRQFLLQGEELLRALDHVN
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgtaccagaaaagaaaagggtgagctcggagcggaggaaggagaag
tcgagggatgcagcacgaagccggcgtggaaaggagtcggaggtgttctatgagctggca
cagcagctgcccctgccccatagcgtcagctccagcctggacaaggcctcgataatgagg
ctcatcatcagctacctgcgcatgagaaaactgctcagcactgctgagccaagggcagag
gaggaaaccgagcttgatacacagctaaacagctcctacacaaaggctttggagggcttt
ctcatggttctggctgaagacggagatatgatctatctctctgagaatgtcaacaagtgc
ctcgggctagcccagtttgacctgactggacacagtgtgtttgacttcatacatccctgt
gaccaggacgagctgagggagatgctggtctataaaacagggcccaaaaaggccaaggaa
tcaaacacagagcgcaacttcttcctccgaatgaaatgcactctcacgagcaggggccgc
acggtcaatgtgaaatcagctacatggaaggtgctccactgctcgggtcatgtccgtgtt
tatgacagccacactgaggagactcccaacgggcacaaggagccacctgttccctacctg
gttttgatctgtgatcccatccagcacccctccaacattgaggtcccactggacaccaag
acctttctcagccgacatacaatggacatgaagtttacgtattgtgacgagaggatcact
gagctcatgggttatgatccagaggacctgttgaatcgttctgtgtatgagtactatcat
gctttggactcagaccatcttaccaagactcaccacaacttgtttgcaaagggccaggtc
agcacaggccagtaccggatgttagccaagagaggaggctttgtgtgggtggaaacacaa
gccactgtcatctacaacaacaagaactcacagccacagtgtgttgtctgtgtcaacttt
gtgcttagtggcatccaggaggagaaactgatcctgtctctggagcagattgaggatgtg
aagccagtgaaggaggaagaaaaggctgtggttgagagcagccaacccgacatgtctcca
accctgccaaaggacgaagagaagggcccagagctggatgtgatcaaactgttcactcag
gcggtagaggcccagcctctggctagcctgtatgaccagttaaaggaagagccagaggcc
ctcaccttgttggcccctgctgcaggagacgcaatcatctccttggattttagctgccct
gattcagagatccagctgctgaaggaggtccctgtctacaacgatgtaatgcttccctcc
actagtgacaatgtggctctgcctctttaccctctgctgcccggggagcctcttcatgtt
accacaaccagctctgaggatgccaaagctaagagctatgctcctgccacgtcccccaca
tcaaccagccagagctccacagaggctgacagtccgctggacttttgtttccccatggac
tcagagatgagctcagattttaaactagacttggtcgagaagctgtttgccattgataca
gagcccaagacccccttcaacacacaggcaatggaagatttagatctggagatgttagct
ccctacatccccatggatgatgacttccagctgcgcagtctgagcccagaagagcttcta
tctggtggaccagtcaaatcccttgagagttctccagtccatgtcacacaggacatccat
agctatcctagctccccatttaatgcaccaggcagtcacacagcttccccagcacccctc
aatgcccctaatcctgccatcgttgttgctaagaggaccccacagctggacaaagaagtc
tcgctcaggaccctggcagctcagaatgcacagcgcaaaagaaaattgggtgacctaata
gagatgatcgaacagggaactttgccacaggaagaagtggagcagggcaaaaagctgaga
gcctccgattcaggaacaaccaggaccatacttctgctgccttcagatatggctagtcgt
ctactgggcagcacatcagagggcaccagttcccttttcactcttccgcagctcacgcgc
tacgactgtgaggttaacgcccccttgcagggtcgtcagttcctgctgcagggagaggag
ttgctgcgcgctctggatcatgtcaattga
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