Etheostoma spectabile (orangethroat darter): 116669833
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Entry
116669833 CDS
T08457
Symbol
pcdh18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
esp04515
]
116669833 (pcdh18)
Cell adhesion molecules [BR:
esp04515
]
Cadherins
Protocadherins
116669833 (pcdh18)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
LapA_dom
Motif
Other DBs
NCBI-GeneID:
116669833
NCBI-ProteinID:
XP_032355791
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Position
20:complement(21263463..21275294)
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AA seq
1234 aa
AA seq
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MIQTKGNIFSSAPFKLLLLVALVHGATGKTLKYKVYEEQKVGTVIARLKEDVAGVLSKLP
SSLTFRFRAMQRGSTPFLSVREEDGEISIGTKIDREKLCEKNSNCSIEFDVVTLPTEYLQ
LFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRVPLDGAMDADVGENSLHTYSLTPN
NFFKIDVRTRTDGAKYAELVVMRDLDREVQSSYQLQLTASDNGVPPKSGSTLLKISISDS
NDNSPAFDEQAYIINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHVSPKILETFKI
NPENGHITLIKKVDFETTASYELDVQAHDLGPNSIPGLCKIVVKVADVNDNKPEININLM
TPGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVICRLHGHGHFRLQKTYEKNYMILT
NVSLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVLDENDNPPSFEKSRYEVFKSENNS
PGAYLMTVVASDPDLGTNGQVTYTVLDALVQGSPISTYVTIDPSNGAIYALRSFDHEDVS
RISFTVQARDGGNPVLTTNTTVLLTVLDENDNAPIIHSPSLRNHTAELPVWKYASPGQLI
TALKVTDRDAGANGEVSCAIVGGNEDGLFVMDARRCELRTNASLVQAPRDVMEIRVEVQD
RGTNRLLTGALFRLSLQENMDILPPLYPTGSSQAPLDLSLIVIISLGAVCALLLIVMVMF
ATARCNREKKDPRHNYNCRVAENSYQNHPKKPARQIHKADITLVPTVNGTLPVRAHPRSP
SGSPTPERGTLGSRQSHHSRQSLNSLVTISSIHVPENFALELAHATPPVEQVSQLLSMLH
QGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPMDRLLGE
GFTEIYAPDGQRRTHAAMRLCTEECRVLGHSDQCWMPPLASPASSADYRSNLYIPGEEAH
QATDHSQEKTPQPCTDAGPARNQSFSTFGKDLGGEDGGDEEERGDAGGEARDEDLCGTTS
LLSEMSSVFQRLLPQGLDSYVQVNENQKGTSLSGVGVPMTGSLDRRRGHLPGKPNPSVHQ
QGVAAWAANTHFQNPGSSIGPSGHHQGGSYHTLKPSTKLGSQNSSHKGLQAPKNSPQNSG
HTPKPHNSPLLTALVSPTMVQPSPAPAPVPVALPGPSSKWLPAMEEIPENYEEDDFDSVL
SHFQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgatccaaaccaaaggaaatatattctcttcagcaccattcaaactgctgctgttggtc
gcgcttgtgcacggagcaaccggtaagactttgaaatataaagtttacgaggagcagaaa
gtgggcacggttattgcacggttaaaggaagatgtagccggggttttgtctaaactgccg
agttccctgacctttcggttccgcgctatgcagcgggggagtacgccgttcctgtctgtc
cgagaggaggacggggagatcagcattggcaccaaaatcgaccgcgagaagctttgcgag
aaaaactccaactgctcgattgaattcgacgtggtcacactcccgacggagtacctgcag
ctgttccatgtggaggtggaagtgctggacataaacgacaactcgccgcacttctcccgc
gccatcgtccccatcgagatctccgagagcgcatccgtagggacgcgcgtcccgctggac
ggcgccatggacgcggacgtgggggaaaactccctgcatacatattccctaacgcccaat
aacttcttcaagatcgacgtgaggacccggacggacggggccaagtacgcagagctggtg
gtgatgagggacttggaccgggaggtgcagtccagttaccagctgcagctcacggcctcg
gataacggcgtgcccccaaagtctggctccactttgctcaagatcagcatctcggattcc
aacgacaacagcccagcctttgatgagcaggcttatatcatcaatttgctggaaaactcc
cccctagggactctcatcattgatttaaacgccacagatccggacgagggcactaatggg
aaaatagtgtactctttcagcagtcacgtctcgccaaagatcttggaaacatttaagata
aacccggaaaatggccacattactcttattaaaaaagtggactttgaaaccactgcctcc
tatgagctggatgtgcaggcccacgacttgggccctaattccattcctgggctttgcaaa
attgtggtgaaggtggcggatgtaaacgacaacaaacccgagataaacatcaacctgatg
acgcctggcaaagaggaagtggcgtacatttcagagggcgccccagtggacaccttcatc
gctctggtacgcgtggacgacagcgacgcagggctcaatggcgaggtgatttgcaggctg
cacggccacggccacttcagactccagaagacgtatgagaagaactacatgatcctcacc
aatgtctcgctggacagggagaagaggtcagagtacagtctgacggtcatagccgaggac
aggggctcccccagcctctccaccatcaaacacttcaccgtccaggtgctggacgaaaac
gacaatcctccgtctttcgaaaagagccgctacgaggtcttcaaatcggagaacaactcc
cccggagcctacctaatgaccgtggtggcctcagatccagacttgggcaccaacggccag
gtcacctacaccgtcctagatgctctggtgcaggggagccccatctccacctacgtcacc
attgacccttccaatggcgccatctacgccttacgcagcttcgaccacgaagacgtcagc
cggatttccttcaccgtgcaggcacgtgacgggggaaacccagtgctgacaaccaacacc
accgtccttctgactgttctggatgaaaatgacaacgcgccaatcattcactccccgtcc
ctccgaaaccacaccgccgagctgccggtgtggaagtacgcatcgcccggtcagcttatc
accgcgctcaaagtcacggaccgcgatgccggcgccaatggagaagtgagctgcgccatc
gtcggtggcaacgaggacgggctgtttgtgatggacgcccggcgatgtgagctcaggacc
aacgccagcctggtgcaggctccacgggacgtgatggagatcagggtggaagtgcaggac
aggggcaccaatcggctgctcacaggtgccctcttcaggctctccctgcaggagaatatg
gacatcctcccccctctctaccccaccggctccagccaggcgccgctggatctctccctc
atcgtcatcatctctctgggcgctgtttgcgctctgctgctcatcgtcatggtgatgttt
gccaccgcccgctgcaaccgcgaaaagaaagaccccagacacaactacaactgtcgcgtg
gcggagaacagctaccagaaccaccccaagaagcccgccaggcagatccacaaggcggac
atcaccctggtcccaaccgtcaatgggactctgccggtgcgtgcccacccgcgctccccc
tcaggctcccctacacctgagaggggcaccctggggagcaggcagagccatcacagccgc
cagtcgctcaacagcctggtcaccatctcctccattcatgtgccggagaactttgcactc
gagctggcccacgccacccctcctgtggagcaagtttcacagcttctgtccatgctccat
cagggccagtaccagccacgaccaagcttcagaggcaacaaatacacccggagctacaga
tatgccctgaatgagatggataagttcagtctgaaggacagcggccgtggagacagtgag
gcaggggacagcgactacgagcctggcagggagtcacccatggaccggctccttggtgag
ggctttactgagatatatgctcctgatggccagcgcagaacgcatgcagctatgaggctc
tgcacggaggagtgtcgtgtcctgggtcactcagatcagtgctggatgccccccctggcc
tccccggcgtcctccgccgactaccgcagcaacctctatatccctggagaagaagcccac
caagcaaccgaccactcccaggaaaagacaccgcagccatgcaccgacgctggccctgcc
cggaaccagagcttctccaccttcggcaaggacctggggggtgaggacggtggagacgag
gaggagcgaggggacgctgggggcgaggccagggatgaagacttgtgcgggaccacgtcg
ttgctgtcagagatgagcagtgtgttccagcgcttgctaccccagggtctggactcgtac
gtccaagtcaacgagaaccagaaggggactagtctcagcggggtgggggtacccatgact
ggatccttggatcgcaggaggggccatctccccggcaagcccaatccctccgtccaccag
cagggtgtggcagcctgggccgccaacacccacttccagaacccgggaagcagcatcggc
ccatctggccaccaccaggggggcagctaccacaccctgaaacccagcacgaagctcggc
tcccagaatagcagccacaaaggcttgcaggcacccaaaaacagcccccagaacagcggc
cacacccccaaaccccataacagtccccttctcacggcactggtcagccccactatggtg
cagccgtcccccgcgcctgcgccagtgccggtggcgctccccgggccctcttccaagtgg
ctgccggccatggaggagatcccggagaactacgaggaggacgattttgactctgtgctc
agccactttcagggcaaacgcagcgacagccgacacgagctggtggacgccagcgagctg
gtggccgagatcaacaaactcttacaggatgtccggcagagctag
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