Etheostoma spectabile (orangethroat darter): 116669942
Help
Entry
116669942 CDS
T08457
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116669942 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116669942 (cpsf3)
03019 Messenger RNA biogenesis [BR:
esp03019
]
116669942 (cpsf3)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116669942 (cpsf3)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116669942 (cpsf3)
U7-dependent histone pre-mRNA processing factors
116669942 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
116669942
NCBI-ProteinID:
XP_032355973
LinkDB
All DBs
Position
20:8977414..8983968
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKVEVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KSVQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQTQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLKIFKNITLIYEAGMVLLEWLANPLNDMYADAVTTVVLEVQSNPKA
QKAMETQSATMDMDVFQTRLGVMLQDMFGEECLDFSDSKNISVTIDGKTVHICLETRSVC
YEDECAEDDSLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaacgcaaagtagaggtgattgtccccgcagaggagagtgaccagctccta
attcgtccactgggtgctggtcaggaggttgggaggtcatgcatcatcctggagttcaaa
ggaaggaaaattatgctggactgtggtatccaccctggcttggagggaatggatgctctc
ccctacatagacttgattgacccagccgagatagacctgctgctcatcagccatttccac
ttggatcactgtggagctctgccttggttccttcagaagaccagctttaaaggcaggacc
ttcatgacccatgccacgaaggccatctaccgctggctactgtcagattacgtcaaagtc
agcaacatttctgcagatgacatgctgtacacggagactgacctggaggagagcatggat
aagattgagaccatcaacttccacgaggtcaaggaggtggctggaatcaagttctggtgc
taccacgctgggcatgtgctgggagctgccatgtttatgatcgagatagctggagtcaag
ctgctgtacacaggagacttctcccgacaggaagacaggcatctgatggcagcagagatc
cccagtgtcaaacctgacatcttaatcatagagtccacctacggcacccacatccatgag
aagagggaggagcgtgaggctcggttctgtaacacagtccatgacattgtcaacagagaa
ggccgctgtttaatccctgtgttcgccttggggagggcccaggaactgctgctcatcctg
gatgagtactggcagaaccacccggagctccatgacatccccatctactatgcatcgtcc
ctggccaagaagtgcatggctgtgtaccagacctacgtcaacgcaatgaacgacaagatc
cgcaaggctatcaatatcaacaacccttttgtcttcaagcatatcagcaacctcaagagc
atggatcactttgatgacattggtcccagtgtggtgatggcgtctccaggtatgatgcag
agcgggctctccagagagctctttgagagctggtgcactgataagaggaacggagtcatc
atcgctggatactgtgtagagggcacactggctaagcacatcatgtctgagccggaggag
atcaccaccatgtcagggcagaagctgcagctgaaaatgtcagtggactacatctctttt
tctgcccacactgactaccagcagaccagcgagttcatcagggccctcaaaccaccccat
gtgatcctggtccacggggagcagaatgagatggcccgtctgaaggctgcgctgatcagg
gagtacgaagataatgaccaggtacacattgaagtccacaaccctcgcaacaccgaagct
gtcaccctcaacttcaggggagagaaactggccaaggtgatgggctctctggctgataag
aagagtgtccagggccagagggtgtcaggcatactggtgaaaaagaacttcaactaccac
atcctcaatccctctgacctttctacatacacagagctggccatgagcacagtgaaacag
acccaggccatccccttcactggaccctactcactgctcgtctgccatctgaggaacctc
accggtgacgtggaagagctggatggaactgagaagaacactttgaagatttttaaaaat
atcacactgatctatgaggccggcatggtgctgctggagtggctagccaaccctctcaac
gacatgtatgctgatgctgtcactactgtagtgctggaagtccagtccaacccaaaggct
cagaaagccatggagacccagagtgccactatggacatggacgtcttccaaacccgacta
ggagtcatgttgcaggacatgtttggtgaggaatgtttggatttcagtgacagtaaaaac
atctctgtgacaatagatgggaagactgtccacatctgcttggaaacgaggtcggtgtgc
tacgaggatgaatgcgcagaggacgactcgctaagagagatggtggagttggcagtgcag
cgcctctatgacgccctcaacccggtcatctga
DBGET
integrated database retrieval system
