Etheostoma spectabile (orangethroat darter): 116670544
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Entry
116670544 CDS
T08457
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH-like
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
esp04121
]
116670544
Enzymes [BR:
esp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116670544
Ubiquitin system [BR:
esp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116670544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-2nd
SHPRH_helical-1st
Linker_histone
Helicase_C
zf-RING_UBOX
PHD
zf-C3HC4
DUF2089
LMBR1
SfNPV_sf27
TPR_10
zf-RING_2
Oxidored_q4
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
116670544
NCBI-ProteinID:
XP_032357009
LinkDB
All DBs
Position
20:1848619..1872588
Genome browser
AA seq
1610 aa
AA seq
DB search
MSSRRKRAPPVKVDEDAKKRLNWNMLDDRKNEEIQLGEQTPTCSIFPVDPPPSNSFLSTA
EGVPEAACSSSVCFPEEPPGTSADSGSASASLALSVVPALKLGHSWKALIGEFSVRPAWI
PSDCELRALVLHRMGEQLHLSYGGCDESSGLQWSAEEDVCTAECSLSGILLEDLDWMQKR
KVVQLCHQAKESSVKVGIYLLETGLGKPEYLSEGNARMKKANQLMQKLMEYFYDFIIPEV
VENENEEEECDTDLERQNVEELYDFVRHLHQRESQEVTYDVQDNALIPVLRPYQSQAVNW
MLKREKYRNTTPKEQILHFLWREVITLCGKKLFYNPFTGCLLREFPLAGVEWPGGILADE
MGLGKTVEVLALILFHHRQDLEQEALTLPVGKSVNYFVPPPPLEKKVIRCKSEVQPKMKV
SYPTVRVMLLTAIKAMRSGKGASVNAVFTYIRATYGYDLLKNRNHIKKMLVKLIDEGLVD
RVKGRGLAGSFKLGKNYKETKKTLTGASKSNSRSAESAPRQIFQRRAKEKAEAALQNSLL
TDDLRDQYSPASDCLEPETATKKEWDESLKKKAEDMLDQSRTALQRTQDKSESETQDVPR
NDELPEERGESLPLESAETETPTRASVVPFNTPDYRFECICGELGIVDYKARVQCMNCQL
WQHADCVNYKEESLETTPFYCPHCLVAMKPVSTGATLIISPSSICHQWVEEINRHIRSSS
LRVLVYQGVKKHGFIQPHMLAEQDVVITTYDVLRSELNYVDIPHSNSKDGRRFRNQKRYM
AIPSPLVAVEWWRICLDEAQMVECPTAKAAEMALRLASVNRWCVSGTPVQRGLEDLYGLV
LFLGVDPYWVKHWWDQLLYRPYRRGNTEPLYNVIAQLLWRSAKKDVIDQIQIPPQTEEVH
WLHFSPVEGHFYHRQHEVCSQDALAKLRKISDWSLKLGSLDRRTVHTILGPLLRLRQACC
HPQAVRGEFLPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRDEFVE
ATEMYREVLRSSEEHKGRLKTDSLQRLHATHNLMELLSAKHPGIPPTLRDDRLSEEAEQL
RQHYMTKYDSEVADAHQALQPVLQNIKELKRKVKLNNPWWLDVIQKAIRCSTDDDLVSRI
KNELTSSYKQQANKLTMAEKFRDACGLQFLLTTQMQDLMKSQKTVQDAVKSLEGPASKKV
IDEVTICHLRPMRLPLNNCVFCKADVLFIDYESKLFSHTVKGQTAIFEEMIEDEEGLMDD
RLPTTSRGLWAASETERSLKAILSFAKVKRMDPELVEEGNTFMELFEFWKKEYKAREATL
FPGVTPTQRRSAGACGIPTPPAPHTMGNSVYLTLFVFLQFDFMTVSLFQWAVLTCGHCFC
NECIAIIVEQYSVGSRRRSIKCAICRQTTSLTEISYVFTTQASSQDQDIPVKGSHSTKVE
AVVRTLKKIQVTDPGAKCLVFSTWLSVLDIIAKALFDNNMEFSQINGIHKFQENLCSFKY
EEKINILLLPLHTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFL
IKSTIEERMQAMLKTAEKNHTSTTMKHSEAAVLTVADLADLFTEDTEHLE
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgaagaaagagggcccctcctgtgaaggtggacgaagacgccaagaagagg
ttaaactggaacatgctagatgaccgcaagaacgaggaaatccagctcggtgagcagaca
ccgacctgctccatttttcctgtcgaccctcctcccagcaactcctttctctcaaccgcc
gagggtgtcccggaggctgcctgcagcagctctgtctgtttcccagaggagcctccaggt
acgtccgctgacagcggctcggcctccgcctccctggccctaagtgtggtgccggctttg
aagctgggccacagctggaaggcgctgatcggggagttcagcgtccggccagcttggatc
ccatctgactgtgaactgagagctttggtgctccacaggatgggtgagcagcttcacctc
agctacggcggctgtgatgagagctcagggctgcagtggagtgctgaggaggacgtctgc
acagcggagtgcagcctcagtgggatcctgctggaggacctcgactggatgcagaagagg
aaggtggtgcagctctgccaccaggccaaagagagctccgtcaaggtggggatttacttg
ctggaaactgggctcgggaagcccgagtacctcagcgagggaaacgctcggatgaagaaa
gcaaatcaattaatgcagaagttgatggagtatttctacgatttcattatccccgaagtt
gtagagaatgagaatgaggaggaggaatgtgacactgacctggagaggcaaaatgtggag
gagctctatgatttcgtcagacatctgcaccagagagagagccaggaggtgacgtatgac
gttcaggacaacgctcttattcctgttctcagaccctatcagagccaggctgtcaactgg
atgctgaagagagagaaatacaggaacactacacctaaagaacaaattctgcatttcctc
tggcgggaggtgatcactttatgcggaaagaagttgttctacaacccctttaccggctgc
ttattacgagaatttcccctggcaggtgtagagtggcctggtgggatcttggctgatgaa
atggggctgggaaagacagtggaagttctggctctcatcctgtttcaccaccgacaggac
ctggagcaggaggccctcaccctgcctgtggggaaatccgtgaattatttcgtacctcct
cctcccctagagaaaaaggttatccgctgcaagtctgaagttcagcctaaaatgaaagta
tcttacccaactgtgcgtgtcatgctcctcactgcaatcaaggcaatgagatctggcaaa
ggagcctccgtcaacgctgtcttcacctacatccgtgccacttacggttatgacctccta
aaaaaccgcaaccacatcaagaagatgctggtgaagctgatcgacgaaggcctggtcgac
cgggtcaaaggccgaggcttggcggggtcatttaaactgggaaagaactacaaagagaca
aaaaagaccttaacgggagcatccaagtctaactccagaagcgcagagagcgcgcccagg
caaatttttcagagacgagcaaaagagaaggcagaagcagcgcttcagaactctcttctt
acagatgatctgagagatcagtactcccctgcgtcggactgtctagaaccagagacagca
acgaagaaggaatgggatgaaagtctgaagaagaaagccgaagacatgctggatcagtcc
aggacagccttacagaggactcaggataaaagcgagtcagaaacacaggacgttcccagg
aatgatgaactacctgaagaaagaggagaatctcttccgcttgaatcagcagagacggaa
acccccaccagagcgtctgttgtccctttcaacacaccggactaccgctttgagtgcatc
tgtggtgaactgggcattgttgactacaaggctcgtgtccagtgtatgaactgccagctg
tggcagcatgcagactgtgtaaactacaaagaagaaagccttgagactacacctttctac
tgcccccactgcctggtcgccatgaagcccgtctccaccggtgccaccctcatcatctcc
ccgagttccatctgccaccagtgggtggaggagattaaccggcacatcaggtcctcctcg
ctgcgagtgctggtttatcagggtgtgaagaagcatggattcatccagccacacatgctc
gctgagcaggatgtggtcatcaccacctacgacgtgctgcggtcagagctcaactacgtg
gacattccccacagcaacagcaaggatggacgccgcttccgcaaccagaagcgctacatg
gccattcccagtcctctggttgctgtggagtggtggcgcatctgtctggacgaggctcag
atggttgaatgtcccactgccaaggctgcagagatggctctacgtctcgcatctgtcaac
cgctggtgtgtcagtggcactccagtccagagaggcttagaagatctgtacggccttgta
ctttttctgggagttgacccgtactgggtaaaacactggtgggaccagctgctttatcgc
ccttatcgccgtggaaacacagagccgctgtacaatgtaattgctcaattgttatggcga
tcagctaaaaaagacgtcattgatcagatccagatcccgcctcagacagaggaggtgcac
tggctgcacttttcccccgtcgagggacacttctaccaccgtcagcacgaggtctgctcc
caggacgctctggccaaactcaggaagatatctgactggagcctgaaacttggcagcctc
gaccgccgcaccgtccacaccatcctgggcccgctgctgaggctgcgtcaggcctgctgc
catccacaggctgtgaggggggagttcctgcccctgcagaaaagcaccatgacgatggag
gagctccttaagtccctgcagaagaaatgtcgagtggagtgtgaagaagctcacagacaa
ttggtgtgcgctctcaatggcctggctggaatacacatcatcagagatgagtttgtagag
gcaacagagatgtatagagaagtgcttcgttcatcagaagagcacaaaggcaggctgaaa
acagattcattacagcgacttcatgctacccacaatttgatggaactgctcagcgcaaag
caccctgggatacctcccacgttaagagatgacagactaagtgaggaggcggagcagctg
cggcagcactacatgaccaaatacgactctgaggtagcagacgcccatcaggctttgcag
ccggtgctacagaatatcaaagagctcaaacgcaaagtgaagctgaataatccctggtgg
ctggatgttatccagaaggcgatccgctgctccactgacgacgacctggtgtcccgcatt
aaaaatgagctgacgtccagctacaaacaacaagccaacaagctcaccatggcagaaaag
ttccgtgatgcctgtggtctgcagttcctactcaccacacaaatgcaagatctgatgaaa
tcccaaaagactgtgcaggacgcggtgaagagtctcgaaggtccggcttcaaagaaagtg
attgatgaggtcaccatttgtcacctcaggcctatgagactgccactcaataattgtgtt
ttttgcaaagcggatgtacttttcatcgattatgagtccaagctgttttctcacacggtg
aagggtcagacggccatctttgaagaaatgattgaagatgaagaggggctgatggacgac
cgtctccccaccaccagccgaggtctgtgggcagccagcgagactgagcgctcgctcaaa
gccatcttgtcttttgccaaagttaaacgcatggacccggagttggtggaggagggtaac
actttcatggagctgtttgagttctggaagaaagagtacaaggctagggaggcgaccctc
ttccccggggtaactccaacgcagcggcgctcagccggggcttgtggtatccccaccccc
ccggcgcctcacaccatgggcaactccgtatatctcactttatttgtttttttacagttt
gattttatgactgtctctcttttccagtgggcagtgctgacttgtggccactgcttctgc
aatgagtgcattgctatcattgtggaacagtacagcgtgggctcgaggcggcgttccatc
aaatgtgccatctgcaggcagactacgtccctcacagagatctcctacgtgttcaccacc
caggcgtccagccaggaccaggacataccggtcaaaggaagccactctaccaaagtggag
gcagtagtgagaacacttaagaagattcaagtgaccgaccccggggccaagtgtcttgtt
ttctccacgtggctgagtgtcctggacatcatcgccaaggccttgttcgacaacaacatg
gagttctctcaaatcaatgggattcacaaattccaggagaatctgtgctccttcaaatac
gaagaaaagatcaacatccttctccttcctctccacaccggctccaatggtctgaacatt
atcgaagcgactcatgtgttgctggtggagccgatcctcaacccagctcacgagctccag
gccataggcagagtgcaccggattggccaaaccaagccaacgtttgtccacagattcctc
atcaaatccaccattgaagagagaatgcaggcaatgctgaagacagcagagaaaaatcac
accagcactaccatgaagcactcggaggctgccgtactgacagtagccgacctggctgat
ctgtttactgaagacacagaacatctggagtga
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integrated database retrieval system
