Etheostoma spectabile (orangethroat darter): 116670815
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Entry
116670815 CDS
T08457
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116670815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116670815
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116670815
Spliceosome [BR:
esp03041
]
Complex C
Other components
Step II factors
116670815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
GIPC1_GH2
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
RSRP
Motif
Other DBs
NCBI-GeneID:
116670815
NCBI-ProteinID:
XP_032357384
LinkDB
All DBs
Position
21:complement(8888847..8900962)
Genome browser
AA seq
1228 aa
AA seq
DB search
MADGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKEPTFDGFKALLLQN
GAEFTDSLVGNLLRLIQTMRPPSKSSTSKASEALVKPKTEKDRLKELFPALCRANDPVPR
KLLDEDDVKVAADAMKELEMFMPSVSGTDSKSSKSRSEKSRRHSRSRSRERNKHRDRDRD
RDRDRDRDRDRDRDRDRETDRKRRYRSRSRSRSRDRDRHRDGDRDKDRGKRRDKSSRWSE
RSPSNKKDQDEDSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEG
LVHISELRREGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRN
VGPDGGDEISMRNPDRPSNLNLGHPPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLS
KEEFPDFDDETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSL
SQAAMMQSALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMP
NDIPEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGS
GKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCT
SPETVIKYMTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMK
LIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEP
PGDVLVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGS
RKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAG
RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME
TLITAMEQLYTXXXLDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSML
SVQNVFYRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSL
RRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQV
VYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQ
KKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggtggagttgacgagctatcgcagcttgaatatttgtccttggtgtccaag
gtctgcacggaacttgataaccatctgggaataagtgacaaagatttagctgaatttgtc
atcgaccttgctgaaaaagagccgacctttgatggattcaaagctcttttgcttcaaaat
ggagccgaattcacagattctctcgttggtaatttgctcaggctcattcagactatgcga
cctccatccaagtcatctacgagtaaagcttctgaggctttggtcaagccgaagacagaa
aaggataggctgaaggagctgtttcctgcactgtgtagagcaaatgatccagtgccaagg
aagctactagatgaagatgatgtgaaggtagcagctgatgcgatgaaagagctggagatg
tttatgcccagtgtcagtgggacagactccaaaagcagcaagagcaggtcagaaaagagc
agacgccacagcagaagtcgaagcagagaaagaaacaagcacagagatcgggacagagat
cgggacagagatcgggacagagatcgggacagagatcgggacagagatcgggagacggac
agaaagagacggtatcgctcaaggtccaggtctcgctccagagaccgtgatcggcaccga
gatggagacagagacaaagatcgtggcaaaagaagagacaaatcttcccgctggtctgag
cgctcacctagcaacaaaaaagaccaagacgaagactctgaccgctggaaggacaaacat
gtggaccgtccaccaccagaggaaccttcggttggggacatatacaatggcaaagtcacc
agtattatgcagtttggatgctttgttcagctggagggattaaggaaacgatgggagggt
ttggtccacatttccgagctgcgtagagagggccgtgtggccaatgtggctgatgttgtc
agcaaaggccaaagagtcaagatcaaggttctctcgtttaccggctctaagaccagcctc
agtatgaaggatgtggaccaggagacaggagaagacctgaaccccaacaggaggaggaac
gtaggcccagacggaggggatgagatctccatgagaaaccccgaccggccgagcaacttg
aacctgggacacccccctgagctggagcaggacgacaccttggagcgtaagaggctcacc
aaaatttctgacccagagaagtgggagatcaaacagatgattgctgccaacgtcttgtcc
aaagaagagttccctgattttgacgacgagactgggatccttcctaaagttgatgatgaa
gaggatgaagatttggaaattgagctggttgaagaggagcccccattcctgaggggacac
accaaacaaagcatggacatgagccctgtcaagattgtcaagaatccagatggctctctg
tctcaagcggccatgatgcagagcgctctggctaaggagaggcgagagttgaaacaggct
gcacgagaggcagagatggactccatccccatggggttgaataaacactgggtcgacccg
ctgccagatgttgatggtaggcagattgcagctaacatgagaggcattggcatgatgcct
aatgacatcccagagtggaagaagcatgcttttggaggtaacaaggcctcctatggaaag
aagacccaaatgtccatcctagagcagagggagagcctgcctatctacaagctgaaggag
cagctcattcaggctgtccatgacaaccagatcctgattgtgattggagagacggggtct
ggtaagaccacgcagatcacccagtacctggccgaggcaggctacaccaccaggggaaag
atcggctgcacgcagccccgtcgtgtggccgccatgtcagtggccaagagagtctctgag
gagtatggttgctgtctaggacaagaggtgggttacaccatccgttttgaggactgtact
agccccgagacggtgatcaagtacatgacagacggtatgctgttgagagagtgtctgatc
gactctgagttgggccagtatgccattatcatgttggatgaagctcacgagaggacaatc
cacactgatgttctctttggtttgctcaagaagactgtacagaaacgcacagacatgaaa
ctgattgtaacatcagccacattagacgccgtgaagttctctcagtatttctacgaagcg
cccatctttaccatcccaggaagaacttacccagtagaggttctctacaccaaagaacct
gagacagactacctggatgccagtctcatcacagtcatgcaaattcatctgaccgaacct
ccaggtgacgtcctggtgtttctgactggacaggaagagattgacaccgcttgtgagatc
ttgtatgagagaatgaagtcactggggcctgatgttcccgagctgattattcttccagtt
tattctgccctgcccagtgagatgcagacaagaatctttgaccctgctcccccaggcagc
agaaaggtggtcattgccacaaacattgcagaaacctctctgaccatcgatggaatctat
tatgtagtggacccaggttttgtcaagcaaaaagtgtacaactcgaagactggcattgac
cagctggttgtgactccaatttcacaggcccaggccaagcaaagggcaggtcgagccggc
agaacaggcccagggaagtgttacaggctctacaccgagagagcctacagagacgagatg
ctgaccaccaacgtgcctgagatccagagaaccaacttggccagcactgtgctgtctctg
aaggcaatgggcatcaatgacctcctgtcttttgacttcatggacgctcctcccatggag
actctgatcacagccatggagcagctctacacnnnnnnnnnnctggatgatgaaggctta
ctcacacggctgggaagaaggatggcggagtttcctctggagcccatgctgtgtaagatg
ttgatcatgtccgtccatctgggctgcagtgaagagatgctcaccatcgtgtcaatgctg
tcggttcaaaacgtcttctacaggcccaaggacaagcaggccttggccgaccagaagaag
gcaaagtttcaccaacctgagggggatcacttgaccctgctggcggtttacaactcctgg
aagaacaacaagttctccaacccctggtgttatgagaacttcatccaggctcgctcccta
cgcagagcccaggacatccgcaaacagatgttgggtatcatggacagacataaactggat
gtggtatcttgtggcaaagccacagtacgggtccagaaagccatctgcagtgggttcttc
aggaatgcagctaaaaaagatcctcaagaaggctaccggacccttatagaccagcaagtt
gtatacatacacccctccagtgctctcttcaaccgccagcctgagtgggttgtgtaccat
gagttggtgctgaccaccaaggagtacatgcgggaggtgaccaccatcgaccctcgctgg
ttggtggagttttcacctgccttcttcaaagtgtccgaccccacacgcctcagcaagcag
aagaaacaacagcgcctcgagcctctgtacaaccgttacgaggagcccaacgcttggaga
atctctcgtgccttcagacgccgttga
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integrated database retrieval system
