Etheostoma spectabile (orangethroat darter): 116671215
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Entry
116671215 CDS
T08457
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116671215
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116671215
09142 Cell motility
04820 Cytoskeleton in muscle cells
116671215
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116671215
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116671215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
116671215
NCBI-ProteinID:
XP_032358181
LinkDB
All DBs
Position
21:12734861..12755721
Genome browser
AA seq
1457 aa
AA seq
DB search
MFSFVDIRLALLLSAAALLARGQGEEDSLFGSCSLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCDDPIIPDGECCPICPDTDTAVDPPVIPDGNEQTKGDVGPKGDPGPA
GPPGNDGLDGQPGVPGPPGPPGPPGLGGNFSPQMSYVDHSKSGGGGTVPGPMGPMGSRGV
PGPPGSSGPQGFTGPPGEPGEPGASGAMGPRGPAGPPGKNGDDGEPGKAGRPGERGAAGP
QGARGFPGTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGESGAPGENGIPGAMGARGLPGE
RGRPGPPGPAGARGNDGNTGAAGPPGPTGPAGAPGFPGGAGAKGETGPAGGRGNDGPQGS
RGEPGNPGPSGPAGAAGAPGSDGQAGAKGSPGAAGIAGAPGFPGARGPAGAQGAVGAPGP
KGNNGDHGPSGPKGEPGAKGEPGPAGVQGLPGNSGEEGKRGGRGEPGGAGPRGPPGERGA
PGARGFPGADGAAGGKGAPGERGANGALGAQGATGESGSPGAPGAPGSKGMTGSPGSPGP
DGKTGPSGAPGQDGRPGPAGPVGSRGQPGVMGFPGPKGVTGENGKPGERGPAGPTGAVGA
PGKDGDVGAPGPSGVAGPAGEKGEQGPVGSPGFQGLPGPQGATGETGKPGEQGGPGEVGA
PGPAGPRGDRGFPGERGSPGIAGPTGGRGAPGPAGNDGAKGEPGAGGAPGGQGAPGMQGM
PGERGASGLPGAKGERGDAGAKGGDGAAGKDGVRGMTGAIGVPGPQGAQGEKGEPGAVGV
AGPTGPRGAPGERGETGPSGPAGFAGPPGADGQPGAKGESGDTGPKGDAGAPGPSGPVGG
AGPQGPPGPAGAKGARGGAGSPGATGPPGPAGRVGPPGPPGASGAPGPAGQVGKEGARGA
RGETGPAGRPGEAGAAGAPGPAGEKGSPGSDGSTGAPGTPGPQGISGQRGIVGLTGQRGE
RGFPGLPGPSGEPGKQGPPGLHGARGPPGPAGPPGLSGAPGEAGREGSAGHDGAPGRDGA
SGPKGNRGENGQAGPPGPPGAPGPPGNAGPSGKTGDRGESGPAGSAGPAGPAGVRGPAGP
AGAKGDRGEAGEAGDRGHKGHRGFTGMQGLPGPAGASGDRGPAGASGPAGPRGPSGSNGS
PGKDGMNGLPGPIGPPGPRGRNGEMGPSGPPGPPGPAGPPGPPGSGFDFISQPIQEKAPD
PFRGGGGHYRADDPKVIQDRDMEVDTTLKTLTKRVEKIRSPDGSQKSPVRMCRDLKMSHP
ELKSDLYWIDPNQGSSLDAIKVHCNMETGETCIYPSESSIPMKNWYLSKNIREKKPIWFS
ESMTGGFQFQYGSDGADPEDVSIQMAFVRLMSNQASQNMTYHCKNSIAYMDSATGNLKKA
LLLQGSNDVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDV
GAPDQEFGVEVGPVCFL
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcagcagcgcttttggcg
agaggtcaaggcgaggaggatagcttatttggcagctgctcattagacggacagttgtac
aacgacaaggatgtatggaaaccagagccctgccagatttgcgtctgtgacagtggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatccgactgcgacgaccccatcatccca
gacggagagtgctgccctatctgccccgacaccgacaccgccgtggacccacccgtgatt
ccagatgggaatgagcaaacaaagggagacgttggccccaagggagatccgggtcctgct
ggtcctcctggcaatgatggactggatggacagcctggtgttcctggccctcctggcccc
cccggcccccctggccttggcggaaacttctctcctcagatgagctatgttgaccactcc
aaatccggcggcggtggaactgtccctggcccaatgggtcctatgggtagtcgtggtgtt
cccggaccccctggctcctctggtccccagggtttcactggcccccctggtgagcccggt
gagcccggtgcttctggtgccatgggtccccgtggtcccgctggaccccctggaaagaac
ggagatgatggtgagcccggcaaagctggtcgccccggtgagcgtggagctgctggccct
cagggtgctcgtggattccccggaacccccggactccccggcatcaagggacacagagga
tttagcggcctggatggagctaagggagatgctggacccgctggccccaagggagaatct
ggtgcacctggtgagaacggtatccccggtgccatgggtgctcgtggtcttcctggtgag
agaggtcgccctggacctcctggccctgctggtgctcgtggtaatgatggtaacactggt
gctgctggaccccctggacctactggacctgctggtgcccctggcttccccggcggtgct
ggtgctaagggagagaccggacctgcaggaggccgtggaaacgacggaccccagggatcc
cgtggtgagcctggtaacccaggaccttctggacccgccggagctgctggtgcccccgga
tctgatggccaagctggtgctaagggttctcctggtgctgctggtatcgctggtgctcct
ggtttccctggcgctcgtggtcctgctggagctcagggagctgttggtgctcctggtccc
aagggtaacaatggtgaccatggtccctctggtcctaagggagagcccggtgccaaggga
gagcctggccccgctggagttcagggacttcctggcaactccggtgaggagggcaagaga
ggaggacgcggagagcccggtggtgctggaccccgtggaccccctggagagcgtggtgcc
cctggtgctcgtgggttccctggtgctgatggagctgctggtggtaagggagcccccggt
gagcgtggtgccaatggcgcattgggagctcagggagccactggtgagtctggaagcccc
ggtgctcctggcgcacctggatccaagggtatgactggtagccccggaagccccggcccc
gatggcaagactggaccttctggtgcccctggacaagatggacgccctggacctgctggc
cctgttggatccagaggacagcctggagttatgggattccccggacccaagggagtcact
ggtgagaatggtaagcccggtgagcgaggtcccgctggtcccactggcgctgttggtgct
cctggcaaagatggtgacgttggtgctcctggaccttctggtgtcgctggacctgctgga
gagaaaggagagcagggacctgttggttctcccggattccagggtcttcctggaccccaa
ggtgctactggtgagactggcaaacctggtgagcagggcggccctggtgaggttggagcc
cctggcccagccggaccaagaggcgacagaggtttccctggcgagcgcggttcccccggc
atcgccggcccaactggaggacgtggtgctcccggccctgctggtaacgatggagccaag
ggagagcctggtgctggtggtgcccctggaggtcagggagcccccggtatgcagggaatg
cccggtgagcgtggcgcttctggtctccccggtgccaagggagagagaggtgatgctgga
gccaagggaggtgatggtgctgctggcaaagatggcgtgcgtggcatgactggtgctatt
ggagtccctggaccccaaggtgctcagggtgagaagggtgagcctggtgctgttggagtt
gctggacccaccggtcctcgtggtgcccctggcgagcgtggagagactggaccctctgga
cctgctggttttgctggacctcctggtgctgatggtcagcctggtgccaagggagagagc
ggtgacactggacccaagggagacgctggtgctcctggtccttctggacctgttggaggt
gctggtcctcagggacctcctggtcccgctggagctaaaggtgctcgtggtggtgctgga
tcccctggtgctactggtccccccggacctgctggaagagttggaccccctggcccccct
ggagctagcggagcccccggacccgctggacaagttggcaaagaaggagcaagaggagca
cgtggtgagaccggtcctgctggtcgccctggtgaggctggcgctgctggagccccagga
ccagccggagagaagggatctcctggctctgatggatccactggcgcccctggtaccccc
ggaccccaaggtatctctggacagcgtggtattgtcggtctcactggacagcgtggagag
cgtggtttccctggtctgcctggaccatctggtgagcctggaaagcagggacctcctgga
cttcatggtgcccgtggaccccccggacctgctggaccccctggactgtccggtgctccc
ggagaggctggtcgtgagggatctgccggtcacgatggtgcccctggtcgtgatggagca
tctggccctaagggaaaccgtggtgagaatggtcaggctggacccccaggaccccctggt
gctcctggaccccccggaaatgccggcccctctggcaagactggtgaccgtggagagtct
ggtcccgctggctctgccggtcctgctggccctgctggtgtccgtggtcccgctggccct
gccggtgcaaagggagacagaggagaggctggtgaggcaggagacagaggacataaggga
cacagaggattcacaggcatgcagggtctgcccggacctgctggagcttctggagacaga
ggacctgctggcgcctccggaccagctggacctagaggaccttctggatctaatggctcc
cctggcaaggatggcatgaacggtctgcccggaccaattggaccccctggacctcgtggt
cgcaatggagagatgggaccttctggtcctcctggacctcctggacccgctggaccccct
ggacctcccggcagtggatttgacttcatcagccagcctattcaggagaaggcacccgat
cccttccgtggcggcggcggccactaccgtgctgacgaccccaaggttattcaagatcgc
gacatggaggtggacaccaccctcaagaccctgaccaagagagtggagaagatccgcagc
cctgacggttcccagaagagcccagtccgcatgtgccgtgacttgaagatgtcccaccct
gagctgaagagcgacttgtactggatcgaccccaaccagggatcctctctggatgccatc
aaggtccactgcaacatggagactggcgagacttgcatctaccccagcgagtccagcatt
cccatgaagaactggtacctcagcaagaacatcagagagaagaagcccatctggttcagc
gagtccatgaccggtggattccagttccagtatggcagcgatggagctgatcccgaggac
gtcagcatccagatggcctttgtgcgcttgatgtccaatcaggcctctcagaacatgaca
taccactgcaagaacagcattgcctacatggactccgccaccggcaacctgaagaaggcc
ctgcttctccagggatccaacgacgttgagatcagagccgagggcaacagccgcttcaca
tacagtgtcagcgaggatggctgcacgtcacacactggcacatggggcaagacagtcatt
gactacaagacatcaaaaacatcccgcctgcccatcattgacattgctcctatggatgtt
ggtgcacctgatcaggaatttggcgtcgaagttggccccgtttgcttcttgtaa
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