Etheostoma spectabile (orangethroat darter): 116671436
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Entry
116671436 CDS
T08457
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116671436 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
esp03400
]
116671436 (msh2)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116671436 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
116671436
NCBI-ProteinID:
XP_032358612
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Position
21:14907405..14917878
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AA seq
932 aa
AA seq
DB search
MAVQPKQNLSMDSAGEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVCLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKIEYKA
SPGNLTQFEEILFGSGTGAVGCAGVVAVRFTTGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAHGESNSDANKLREVVQRGGMLVSDKKRSEFSSKDMVQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLDLLSDESNFNSFSLTTLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLIDVTKIEERLD
LVESFVCDSELRQSCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRVYQAVSHVPALVMAL
ERYSGSYQVLLEAVFLSPLRDLQTDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDALEKSMQGVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNGKLSSLNEDYGKNKEEYEEAQNAIVKEIINIASGYVDPLQALSDVIAQ
LDAVASFAVASVSAPVPYVRPRLLADGCRRMELQQARHPCMETDADTAFIPNDITFVQGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWGISEHIASKISCFCLFA
THFHELTALAVQQPTVHNLHVTALTSHNTLTMLYRVKSGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGESEDEPESKRRRTDKQVGEKLIQDFLEKAKSLPAATMSDEEV
KAALLRMKQELVAKNNPYIKELLSRCVPAKTA
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacaaaacctgtccatggacagtgctggcgaacatggcttttta
aacttcattttctccatgccggagaaaccagacactactttcagaatattcgaccgtaac
gattactacaccgttcacggaaaagatgccatatttgcggcgaaggaggtgttcaagacg
aacggggtcatcaaatatttaggctcagggagtcgcaagttggagagtgtgtgcctgagc
aagctgaactttgaggcctttgtgaaagacttgctgctggtgaggcagtatagggtagaa
gtgtacaagaaccacagcaagagcagcaaagagcacgactggaagatcgagtacaaggcc
tctccaggaaacttgacccagtttgaggagattctgtttggtagtggaaccggagcagtg
ggttgtgcaggagttgtagccgtgcggtttactacaggagccgatggacagcgtgtggtt
ggggtcggctatgtggacgcagcccagaggaccatgggagtgtgtgaatttccagataac
gagatcttttccaacttggagtcccttcttgtccaaatcagccccaaagaatgtctcttg
gcccatggcgaatccaacagtgacgccaataaactacgggaggtggtacagcgtggcggc
atgctggtctctgacaagaagagatcagagtttagtagcaaggacatggtccaggatctc
aacaggctgctacgggccaagagaggagagactgtggcgagcaacactctgcctgagctg
gacaaacaggtggctatgtcgtgcttggctgcagtggtgcgtttccttgacctgctctca
gacgagtccaacttcaactccttcagcctgaccacactggacctgggtcagtacatgagg
ctggacaacgctgccgtgagggctcttaacctcttccagggatcgcctgatgacaccagt
ggagctcattcattggccggtctgttgaacaagtgccgtacaccacagggccagcggctt
gtcaaccagtggatcaaacaacctcttatagatgtaaccaaaatagaggaaaggctggac
ctggtggagagcttcgtgtgtgactctgagctcaggcagagctgtcaggaggacttgctg
cggcggtttcctgatcttcaccgtctggccaagaagttccaccgtcactctgcaacgctg
caggactgctaccgcgtctaccaggctgtgagccacgtcccggccctcgtcatggccctg
gagagatactcaggtagctaccaggttctgttggaggcggtattcctttctcctctcaga
gacctgcagacagactttgttaagtaccaggagatgattgaaaccacactggacatgaac
cagattgaccaccatgagttcttggtgaaggcgtcgtttgatccagtgttgagtgagctg
agagaaaagatggacgcgctggaaaagagcatgcagggggtgctgaacagtgcagccaga
gaactgggtctggacgctggaaagacggtgaagctggagtccaatgccatgctgggtttt
tacctcagagtcacatgcaaagaggagaagagtctgaggaacaacaagaaattcaccacg
ctggatgttcagaagaacggagtgcgcttcacgaacggtaagctgagctctctaaacgag
gactacggcaagaacaaagaggagtatgaggaggcccagaatgccattgtcaaagaaatc
atcaacattgcttcaggttacgtggatccgctccaggcgctgagcgacgtgatagcgcag
ctggacgcagtggcgagttttgctgtggcgtctgtctctgctcctgtgccgtatgtcagg
ccccggctgttggcggacggatgcaggcgcatggagctgcagcaggccagacatccctgc
atggagacggacgcggacacagccttcatacccaacgacatcactttcgtccagggagag
aagaacttctacattataacaggaccaaatatgggcggcaagtcgacattcatccgtcag
gtgggtgtgatcgctctgatggctcagatcggctgctttgtgccatgtgagaaggcggag
cttagtgtgattgacagcgtcctggccagggtgggagcaggagacagccaggtcaaagga
gtgtccacctttatgtccgagatgctggagacggctgccattctgcgctcggccacggag
aactcgctcatcataatcgacgagctcggcagaggcacgtccacatacgatggcttcggt
ctagcgtggggcatcagcgaacacatcgcctccaaaatcagttgcttctgtctttttgcc
actcacttccatgagctgacagcgctggcagtgcagcagcccaccgtccacaacctgcac
gtcacagccctgacctctcacaacacactcaccatgctgtacagggtcaaatcaggtgta
tgtgaccagagttttggaatccacgttgctgagttggcatgcttcccgccatcggtggtt
gccatggccaaggagaaggcagaggagctggaggagttccaagaaccagcgggggagtcg
gaggacgagcccgagtccaagagacgacggacagacaaacaagtgggggaaaagctgatc
caggacttcctggagaaggcaaagtcactccctgctgccactatgagtgatgaagaggtg
aaagcagcactcttgagaatgaagcaggagcttgttgccaaaaacaacccatatatcaaa
gagctcctttcacgctgtgttcctgcaaaaacagcttga
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