Etheostoma spectabile (orangethroat darter): 116672413
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Entry
116672413 CDS
T08457
Symbol
trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
esp04040
]
116672413 (trpa1)
Ion channels [BR:
esp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116672413 (trpa1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
Amdo_NSP_1-3
Motif
Other DBs
NCBI-GeneID:
116672413
NCBI-ProteinID:
XP_032360139
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All DBs
Position
22:complement(13645673..13664914)
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AA seq
1118 aa
AA seq
DB search
MNFSRDVTRQTSCYTYVIEDEDPALSRLNVFKLAEKGELALLDNLVKKSPEVLSEKDECG
AGPLHHAAAGDHINLIQFITTVIDSQDLNSCDDQGNVPLHWAVERNKAESCRALLDLGAN
PNILNMVLMSPLHLAVSHGHNNLVELLLSYSATDCNLQGDLGNTPVMLACSINNCEALST
LLKHGARLCQQNKLGHFPIHAAAFAGAKKAMEVILMAGEKLGHQVEFHINYLDKSKSSPL
HLAVRGGNIEAISLCLATGAKVDQQQNDRSTPLHLACTQGATEVVKLLLSSFDQVEDIIN
LTDGACQTPLHRATIFDHKDLAEYLISLGADLNSIDCKGNSPLLLAASCGAWRTVTLLLS
KGANVNVKDRSGCNFLHLTILQPKGLKNLPEELLQSGAVKALLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQVGLSCKSKDKKSALHFAAQFGRLNTCKRLLETITDSRLLNEGDER
GLTPLHLASKEGHTKVVQLLLRKGALFHSDYKGWTCLHHAASAGYTQTMDILLSANLKLL
DKTDEDGNTALHIAAREGHVAAVRLLLAQGAALTLNKNDTSFLQEALQNGRKDVVNNVID
SHRSAEALSLFTPGSGQRSPILDMIEFLPETYKHLLDRCVRESDDDHNCPDYHIEYNFSW
LQAPLESRKVTDKTLRVQPLAALNAMVKYNRIELLNHPVCKKYLAMKWFAYGSTAHVLNM
FMYLMGLLPLTHLIVTLRPTLNTTDTGEHIIMMVPTSFIQQSLFLSFCMVMVLVMNFYCI
AKELVQISQQRWNYFKDYSNQSDWFSAVLSLLFIIPTMLNVEGSLQWQAGALAVLSSWIG
FLLYLQRFEGVGIYVVMFWEIMRTLVRIVMLFVYLMLAFSLAFYALMLNQKEFDTVPLSV
IQTFVMMVGELNYQNNFLDTYLKNELPFGILTYIIFVHFVLLMPILLVNLMIGLAVGDIA
EVQRNAALKRIGMQIELHTALEDKLPYWFMKRVDKPSLTIYPNRHCSRNYIKQLFTGEEE
TNDAWNRLQVKSQSCTVIENELKKQKLRMKEMSSMMEKQHNLLKLIIQKMEISSEADECD
GPVNIRGKMWPSLTQVKPKGHSVSRWVPLLKAIESKKK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggacgtgacgcgacagaccagttgttatacatatgtgatagaggat
gaggatccagccctgtcaaggctaaatgtatttaagttggctgagaagggtgagctggct
ctcctggacaacctggtgaagaagagcccagaggtcctgagtgagaaagatgaatgtgga
gctggtccccttcatcacgccgccgcaggggaccacatcaacctcatccaattcatcacc
actgtcatagactcacaggatctgaacagctgtgatgaccagggcaatgtgcccctacac
tgggcagtggagaggaacaaggcagagagctgcagggctcttctggacctgggggccaac
cccaacatcctcaacatggtcctcatgtcccctctgcacctggctgtcagccacggacac
aacaacctggtggagctgctgctgtcatacagtgctacagactgcaatctacagggagac
cttgggaacacccctgtgatgcttgcctgctccatcaataactgtgaggctctcagcaca
ttgttaaagcatggagcgcggctctgccaacagaacaagctcggccatttccccatacat
gcagccgccttcgcaggtgcaaagaaagccatggaagtcatcctgatggccggagagaag
ttaggccaccaagttgaattccacatcaactatttggacaagtccaagagcagtcctctc
catctggctgtgcgtggcgggaacattgaggccatcagcctttgtcttgctactggagcc
aaagttgaccagcaacagaatgacaggtccacaccgcttcatttggcctgcacccagggt
gctactgaggtagtcaaactgctgctgtcatcctttgaccaagtggaagacataatcaac
ctaactgatggggcgtgtcagacccctctacacagggctacgatatttgaccacaaggac
ttggcagagtacctcatttcattgggtgcagaccttaacagcattgattgtaaaggaaac
tctcccttgctgctggctgcaagttgtggagcatggagaactgtcactctgctgctgtca
aaaggggcaaatgtaaacgtgaaagacagaagtggttgtaactttcttcacctgaccatt
cttcagcccaagggtctgaaaaacctcccagaagaactactgcagagtggtgcagtgaag
gcactgctgagctgtgaggataatgagggctgcaccccactccactacgcttgcagactg
ggtatccatgactcagtgaagaacatgctgggcctctcggggcaggtcggcctctcatgc
aagtcgaaggacaagaagtctgccttgcactttgctgctcagtttgggcgcttaaataca
tgcaagcgattactggagaccattacagactctcgtctgctaaatgaaggggacgagcga
ggcctgacaccgctgcatttggcttcaaaagaggggcacaccaaggtggtgcagctgttg
ctgcgcaaaggagctctctttcacagtgattacaagggttggacgtgtctgcaccatgcc
gcatctgcaggatacacacaaactatggacattctcctgtcagccaatctcaagttactg
gataaaacggatgaggatgggaatactgcactccacatcgcagcaagagaaggacatgtg
gctgcagtcaggctcctgctggctcagggtgcagcgctcaccttaaacaagaatgacacg
tcattccttcaagaagctctgcaaaatgggagaaaagatgttgtcaataatgtaattgac
agtcacagatctgctgaggctttgagcctgtttacacccgggtctggccagcgaagtccc
atactggacatgattgagtttctgcctgagacctacaagcacctattggaccgctgtgtg
agggaatctgatgatgatcacaactgtcctgactatcatattgaatacaatttctcgtgg
ctccaagctccccttgaatcgaggaaggtaactgacaagaccttgagggttcagccacta
gctgcactcaatgcgatggtgaagtacaaccgcattgaactcctcaaccaccctgtctgc
aaaaagtacctagcaatgaagtggtttgcatatgggagcacagctcatgtgctcaacatg
tttatgtacctgatgggtcttctgcccctcactcacctgatagtgactctgaggcccact
ctgaacaccactgacacgggcgagcacatcattatgatggtgcccacatctttcatacag
caaagtctgttcttgtccttctgtatggtgatggtcttggtcatgaacttctactgcata
gcgaaggaattggtgcagatatcacaacagcgctggaattacttcaaggattattccaac
cagagtgactggttttcagcagtcctctctcttctgttcatcattcccaccatgctcaat
gtagagggttctttacaatggcaagcaggggcgttggcagttttgagctcctggattgga
tttctcctttatctccaaaggtttgagggcgtaggcatctatgttgtgatgttttgggag
atcatgaggacactggtccgtatagtgatgctgttcgtgtacctgatgttagcattcagt
ttggcattttatgctctaatgctcaaccagaaagagtttgacaccgtgccgctctcagtg
atacaaacctttgtgatgatggtcggggaactcaactaccaaaacaacttcctggacact
tatctgaagaatgagcttccttttggtatcctgacttatatcatttttgtgcactttgtt
ttgctcatgccaatactgctggtgaacctgatgatcggtttagcagttggagatattgca
gaagtacaaagaaatgctgccctaaaaagaataggcatgcagattgagctccacactgct
ctggaagacaagctgccttattggttcatgaaacgagtggacaaaccctccctcaccatt
tatcccaatcgacactgctccaggaactatataaagcaattattcacaggtgaggaggag
acaaatgatgcctggaatcgtctgcaggtcaaatcacagagctgcaccgtgatagagaat
gagctcaaaaagcagaagctcaggatgaaagagatgtcaagcatgatggagaagcaacac
aacctcctgaagctcatcatccagaagatggagatctcctcagaggcggacgagtgcgac
ggccctgtgaacatcagaggcaaaatgtggccgagtttaactcaggttaaacccaaagga
catagcgtgtcgcgttgggtcccactgctgaaggccatcgagtcaaaaaaaaagtga
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