Etheostoma spectabile (orangethroat darter): 116672418
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Entry
116672418 CDS
T08457
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
116672418 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
esp03000
]
116672418 (sox17)
Transcription factors [BR:
esp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116672418 (sox17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
116672418
NCBI-ProteinID:
XP_032360148
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Position
22:complement(9556755..9558655)
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AA seq
400 aa
AA seq
DB search
MSSPDAGYASDDQTQARCTMSVMMPGMGRCQWVDPISPLGDTKVKNEPCASSSGSQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQGSSMPGDGRLCVESLGLGY
HEHGFQLPSQPLSHYRDAQALGGPSYETYSLPTPDTSPLDAVESELTFFPQPSQEDCHMM
PAYAYHSQAAEYQPQDSLSNHHSNHILHRHPASASEQPPQPATLPPSYMGCPNPLAMYYT
QHCSHSHPKRHPGGAGHLSPPPDSHPHSTDSVEQMHHSELLAEVDRSEFEQYLSSSSARA
DMTGLPYGPHETGMQGPESLISSVLSDASTAVYYCSYNNS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagcgacgatcagacccaggcaaggtgtacgatg
tcagtcatgatgcctggaatgggacgctgccagtgggtcgaccctattagtcctctcggg
gacaccaaagtaaaaaacgagccgtgcgcctccagctccggcagtcagaatcgcggcaag
accgaaccgcggatccgacggcccatgaacgcgtttatggtctgggcgaaggatgagcgc
aagagactggcgcagcaaaacccagacctgcacaacgcggagcttagcaaaatgttagga
aaatcatggaaagcccttcctgtcacagaaaagcagccctttgtggaggaggccgagcgg
ctgcgggttcagcacatgcaggatcaccccaactacaagtaccggccgcggcggcggaag
caggtgaagaggattaagaggctggactccggctttctagtccacggcgtgtccgatcac
cagggctcgtcgatgcccggggatggcagactgtgtgtggagagtttgggtcttggctac
cacgagcatggcttccagcttccttcccagccgcttagccactaccgagatgctcaggct
cttgggggcccttcttatgaaacctacagcctccctacgcctgacacctctcctctggac
gctgtagagtcagaactcacgttcttccctcaaccttcacaagaggactgccacatgatg
cctgcatacgcttaccactcccaggcggcagagtaccagccccaggactccctctccaac
caccacagcaaccacatcctgcaccgacaccctgcctcagcttcagagcagcccccccag
cccgccacccttcccccttcctacatgggatgccctaaccctctcgccatgtattacacc
cagcactgcagtcacagccaccccaaacggcatcccggtggggcaggacacctctccccc
cctcctgactcccaccctcactcaacagacagcgtggagcagatgcaccactccgagctg
ctggccgaggtggaccgcagcgagtttgagcagtatttgagctcctcttcagctcgtgcg
gacatgacaggcttgccgtacgggccacatgagactggcatgcaaggacctgaaagcctc
atatcatctgtgctgtcagacgccagcacagctgtgtattactgtagctacaacaactcc
taa
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