Etheostoma spectabile (orangethroat darter): 116673002
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Entry
116673002 CDS
T08457
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116673002
03015 mRNA surveillance pathway
116673002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116673002
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116673002
mRNA cycle factors
P-body specific factors
116673002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
116673002
NCBI-ProteinID:
XP_032360960
LinkDB
All DBs
Position
23:complement(9342575..9365564)
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AA seq
1278 aa
AA seq
DB search
MPAERKHSVNMDEKDDCTFGNKEKEKDREGERRPASARDKAKDEAKMSGKKDGGKEEKRK
RLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKRQQEEEEQKLQEEEVKRQREEAAA
LLKEKEEGHQLHQEAWERNQCRKELRSKNQNAQEGRPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRDSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDR
ETHTHVSVVISFCKHCGDDIAGLLPRKVKLAAEKFGLGFPPSEIISTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADL
LDENMPELPVDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVP
AILFKDNEKSSQGKDKDEAKDGKEGKDAASTTEELELELEALDITDEPLELEGPDEAENE
ELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNR
RKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHMRKKDQINIE
TKNKTVRFIGEQAKFKMYSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSH
LRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWHDPEVKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGI
NQDGSPSALDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSIDV
WTKDHPFPIDIDYMISDTLELLRPKMRLSCSLEEATKQVTDLEREVLYKLGLAMEKDGRS
SAMSEGEVLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENT
DYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGETVKVH
QLDVAIPLQLKSQLKKGGSREQCIGEADSDVSDTMQFVMLTRKGNKQQYKILNVPLSSHL
AANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQH
PKGAPNADLIFKTGGRRR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcactccgtaaacatggacgagaaagacgattgcaccttcggt
aacaaggagaaggagaaggaccgagagggcgagagacgaccggcgtctgcccgagacaaa
gcaaaggacgaggccaagatgagcggcaaaaaagacggcggcaaggaggagaagaggaag
cgcctggaggaggagaagaagaagaaagaggaaaaggagcgaagaaagaaggaggaggaa
aagcagaaagcggaggaggagcagaagaagaaagaggaggaggagaagagacagcaggag
gaggaggagcagaagcttcaagaggaggaggtcaaaagacaacgcgaggaggccgcagct
ctcctcaaggaaaaggaggaggggcaccagctgcaccaggaggcctgggaacgtaaccag
tgcaggaaggaactccgcagcaagaaccagaacgcccaagagggtcggcccgaagaggcc
ttcttcagccgactggactccagcctgaaaaagaacaccgcctttgtcaagaagctgcgc
acgctcaccgagcagcagcgagactcgctctccaacgacttcgcctcgttgaacctcagc
aagtacatcggcgaggccgtgagctctgtcgtggaggccaagctgaagatctccgacgtg
ggctgcgccgtccacctctgctccctcttccaccaacggtacgctgagttcgctccgttg
ctgctccaggcgtggaagaagcacttcgaagcgaggaaggaggacaaggcgcccaacgtg
agcaagctgcgcacagacctgcgcttcatcgccgagctcaccatcgtcggcctcttcacc
gacaaagaagggctgtcgctgatttacgagcagctgaagaacatcatcgggaccgaccgg
gagacacacactcacgtgtcggtggtaatcagcttctgtaagcactgtggggatgacatc
gctggcctgttgccccgcaaggtgaaactggctgctgagaagttcggtttgggcttccct
ccgagcgagataatcagcacggagaaacagcagcccttccagaacctgctacgggagtac
ttcacgtcactcaccaagcacctgaagaaggaccaccgggagctgcagaacattgagagg
cagaacagacgtatcctacattccaaaggggagctgagtgaggatagacacaagcagtat
gaagagtttgccacttcctaccagaagctgctggcgaacactcagtccctggctgatctg
ctggatgaaaacatgcctgagctgcccgtggacaagactgtgcaggaggagcacgggccc
ggcattgacatcttcacccctggaaagcccggagagtatgacctggagggagggatctgg
gaagatgaagacgctcgtaacttctacgagaacttggtggacctgaaggccttcgtccct
gccatcctcttcaaggacaacgagaagagcagccaaggcaaagacaaggacgaagccaaa
gatggcaaagaggggaaagacgcggccagcaccacagaggagctggagctggagctggag
gctctggacatcacggatgaacctctggaactggagggaccagacgaggcagagaatgaa
gaactggccaaaaaactgctggatgagcaagaacaagaggatgaagaggccagcacaggg
tcccatttgaagctgatcgtggacgccttcatccaacagctccccaactgtgtcaacaga
gacctcatagacaaggctgccatggacttctgcatgaacatgaacaccaaatccaacagg
aggaagctggtccgagccctcttcactgtccccaggcagaggttggatcttctgcccttc
tactctcgcctggtggcaacccttcatccctgcatgtcagacgtggctgaggacctttgc
tccatgctgaagggagacttcaggtttcatatgcggaagaaggaccaaatcaacatcgag
acaaaaaacaaaacagtcagatttatcggggaacaggccaagttcaaaatgtactcaaaa
acggacacacttcattgtctcaagatgttgctgtctgatttcacccatcaccacatagag
atggcctgcacactgctggagacctgcggccgcttcctcttcagatcccccgactctcac
ctgcgtaccagcgtcttgctggagcaaatgatgcgtaaaaagcaggcccagcatcttgac
gcccgctatgtcacgatggtggagaacgcctactactactgcaaccccccacccatggag
aagacggtgaagaagaagaggcctccgctgcaggagtacatccgcaagctgctctacaag
gacctgtccaaggtcaccacggagaaggtgctgaggcagatgcgcaagctgccctggcac
gaccccgaggtcaagagctacctgatctgctgcatggtcaacatctggaacgtcaagtac
aacagcatccactgtgtggccaacctgctggccggcctggtggcctaccaggaggacgtg
ggcatccacgtggtggacggagtgctggaggacatccggctgggcatggaggtcaaccag
cccaagttcaaccagcggcggatcagcagcgccaagttcctgggcgagctctacaactac
cgcatggtggagtcggccgtcattttccgcaccctcttttccttcatctcctttgggatc
aatcaggacggcagccctagcgcactggaccctccggagcacctgttccgcatccgcctg
gtctgcactttgctggatacctgcggccagtactttgaccgaggctccagcaagaggaag
ctggactgtttcctcatctacttccagcggtacatctggtggaaaaagagcatcgatgtt
tggaccaaggaccacccgttccccatcgacatcgactacatgatcagtgacaccctggag
ctgctcaggcccaagatgaggctcagctgctccttggaggaggccaccaaacaggtcacc
gacctggagagggaggtgctctacaaactaggtctggccatggagaaggacggtcgctcc
agtgccatgagcgaaggcgaggttctcgatgaggaggacgacgatggcgatgacgacgaa
gagggaggtgcagagactgaggagcagtcgggcaacgagagtgaaatgaacgaacaggaa
gaggatgaagggtcagagaacgaagaagaggagagggaggaagaggaagaagagaacacc
gactacctgaccgactccaataaagaaaatgagactgatgaggagaacaatgaggtgacc
atccgcggcggaggactgaagcacgtggcctgcgccgaggacgaggacttcattcaggct
ctggacaagatgatgctggagaacctgcagcagcgcagcggcgagacggtgaaggtgcac
cagctggacgtggccattccactgcagctgaagagccagctgaagaaggggggctccaga
gagcagtgcatcggggaggcggactcggacgtctccgacaccatgcagttcgtcatgctg
acccgcaagggcaacaagcagcagtataagatcctgaacgtgcccctgtcatcccacctg
gcggcgaaccacttcaaccagcagcaagccgaacaggaggagcgcatgaggatgaagaaa
ctcaccctggacatcaatgagagacaggagcaggaggactaccaggagatgatgcagtcc
ctcgcgcagcggccggctccggccaacaccaaccgggagcgccggcctcgctaccagcac
ccgaaaggcgctcccaacgccgacctcatcttcaagaccggaggaaggagacgctga
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