Etheostoma spectabile (orangethroat darter): 116673510
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Entry
116673510 CDS
T08457
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116673510 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116673510 (prpf8)
Spliceosome [BR:
esp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116673510 (prpf8)
Complex C
U5 SnRNP specific factors
116673510 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
116673510
NCBI-ProteinID:
XP_032361760
LinkDB
All DBs
Position
3:complement(24727624..24744767)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPVGMPPGVPPPVPVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDSEEDSSVAEWLYEHQPLKDSAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaccttcccgtacagaggggtccctgtggggatgccaccaggtgtaccccct
cctgtgcccgtcccggactacatgtctgaggaaaaactgcaagagaaagcaagaaaatgg
cagcacttacaggcaaaacgctactccgaaaagagaaagtttggcttcgtggatgctcag
aaggaagacatgccaccagagcatgtacgcaagatcatcagggaccatggagacatgacc
aatagaaagtttcgccatgacaagagggtgtaccttggtgccctcaagtacatgccccat
gcagtactgaagctcctcgaaaacatgcctatgccctgggaacagatcagagacgtgccc
gtcctctaccacatcaccggagctatttcctttgtgaatgaaatcccctgggtcatagag
ccggtctacatcgctcagtggggcaccatgtggatcatgatgcggcgtgagaagcgtgat
cgtcggcacttcaagcggatgcgtttcccaccatttgatgatgaggagccgccactggac
tacgctgacaacatccttgatgtggaaccactggaggccatccagatggagctggactct
gaggaggactcttcagttgcggagtggttatatgagcaccaacccctcaaagactctgcc
aagtttgttaatggcaccacctaccgtcgctggcagttcacactgcccatgatgtccaca
ctgtaccgtttggccaatcagctgctcacggacctggtggatttcaattacttttatctg
tttgacctcaaggccttctttacgtccaaggccttgaacatggccatacctggaggacca
aagtttgaaccactggtccgggacatcaacctccaggatgaagactggaatgagttcaat
gacatcaacaagatcatcatccgacagcctataaggacagagtacaaaatcgccttcccc
tacctgtacaacaacttgccgcaccatgtccacctcacctggtatcatacacccaacgtg
gtatttatcaagacagaagatccagatctcccagcgttctactttgacccgctgatcaac
ccaatttcacacagacattctgtcaagagtcaggagcctctgcctgatgacgatgaggag
tttgagcttcctgaatatgtggagcccttcctcaaggacaccccactctacaccgacaac
acggctaatggcattgctctgctgtgggcacccagacccttcaacctcagatctggccgc
acacggcgtgccattgatatccccctgatcaagaactggtaccgtgagcactgccctgca
ggacagccggtgaaagtgcgtgtgtcataccagaaattgcttaagtactatgtgctcaat
gctctcaaacacagaccacccaaggcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttcttccagtccaccaagctggactgggttgaggtgggtctgcaggtttgc
cgacagggctacaacatgctcaatctgcttatccaccgtaagaacctcaactacctgcat
ctcgactacaacttcaacctgaagcctgtcaagacactgactacaaaggaaagaaagaag
tcccgattcggtaatgcctttcacttgtgcagagaggtgctgcgtctcagtaagctggtg
gtggacagccacgtgcagtacagactgggaaatgttgatgccttccagttgtctgatggg
ctgcagtacatcttcgcccatgtgggccagctgacaggcatgtaccgctacaagtacaag
ttgatgagacaaatccggatgtgcaaagatctgaaacatctcatctactaccggttcaat
actggtcctgtgggcaagggtccaggttgtggcttctgggctcccggctggagagtgtgg
ctgttcttcatgagggggatcactcctctgttggagaggtggctggggaatctgctggcc
aggcagtttgaaggacgtcactccaagggtgtagccaagacagtgaccaaacagcgtgtg
gagtctcactttgacttggagctgcgtgctgccgtgatgcatgacatcttggacatgatg
cctgagggcattaaacagaacaaggccagaaccattctgcagcacctcagtgagtcctgg
aggtgctggaaggctaacatcccctggaaggtgccgggcctgcccactcccattgagaac
atgatcctgcgctacgtgaaggctaaagctgactggtggaccaacactgcccattacaac
cgtgagcgaatccgccgcggagccactgtggataagacagtgtgcaagaagaacctgggg
agactgacccgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggat
ggaccctacatcacagctgaagaggcggtagccatctacaccaccacggttcactggctg
gagagtcggcgcttctcgcccatccctttccctccactgtcctacaaacatgacaccaag
ctgctcatcctggccttggagaggctcaaggaggcgtacagtgtgaagtcgcgtctgaac
cagagtcagagggaggagctggggttgattgaacaggcctacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacctgctcacccagagagcctttaaagaggttggtatcgag
ttcatggacctgtacagtcatctggtgcccgtgtatgatgtagagcccctggagaagatc
acggatgcctaccttgaccagtacctgtggtacgaggcggacaagagacgcctcttccca
ccctggatcaaacctgccgacactgaaccaccgcccctgctggtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagacggcggagggagagtgcaacgtgatgctc
gagtcccgctacgagaagatgtatgagaagattgatctgaccctgctcaacaggctgctg
cgtctaattgtggaccacaacatcgctgattacatgacggccaagaacaacgttgtcatc
aactacaaggatatgaaccacaccaactcctacggcatcatcagggggctccagtttgcc
tcattcattgtacagtactacggtctggtaatggacctgctggtgctgggcctgcaccgt
gccagtgagatggccggcccccctcagatgcccaatgacttcctcagtttccaagacaca
cccacggagagcgcccacccaattcggctgtactgccgctacatcgaccgcatccacatc
tttttcaggttctctgctgacgaggccagagatctgattcagaggtacctgacggagcac
ccggaccccaacaatgaaaacatagtgggctataacaacaagaagtgttggccacgtgat
gctcgcatgagactgatgaagcacgatgtcaaccttggacgtgctgtgttctgggacatc
aagaaccgcctgcccagatcggtgaccactgtccagtgggagaacagctttgtttcggtc
tacagcaaagacaaccccaacctgctcttcaacatgtgtggctttgagtgccgcattttg
ccaaagtgccgcaccagctatgaggagtttacccacaaagacggtgtgtggaacctgcag
aacgaggtaaccaaagagaggacagcccaatgtttcttgcgtgtggatgatgaatcgatg
cagcgcttccacaacagggtgcgccagatcctgatggcctctggatccaccacattcacc
aagattgtgaacaaatggaacacggctttgatcggtttaatgacgtacttccgtgaggct
gtggtcaacacccaggagctcctggacctgctggtgaaatgtgagaacaagatccagacg
cgtattaagatcggcctgaactccaaaatgcctagccgtttccctcctgtagtcttctac
actcccaaagagttgggcggccttggcatgctgtctatgggccacgtgcttattcctcag
tcagacctgcggtggtccaagcagacagatgtgggcatcacccacttcaggtctggaatg
agccatgaagaagaccagctgattcctaacctgtatcgttacattcagccatgggagagt
gagttcattgactcccagagggtttgggctgagtatgccctcaaaagacaagaggccatt
gcccagaacaggcgtctgaccctggaagatttggaggactcgtgggacagaggaattcct
cgtatcaacacacttttccagaaggacagacacacactggcttatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtgctgaagcagaatccattctggtggacccac
cagaggcacgatggcaaactgtggaacttaaacaactaccgcacagacatgatccaggct
ctgggaggtgtggagggcatcctggaacacactctctttaaaggcacttactttcccacc
tgggagggtctcttctgggaaaaggcgagtggctttgaggagtccatgaaatggaaaaag
ctgaccaacgcccagaggtctggtctgaaccaaatccccaaccgtcgctttacactttgg
tggtctcccaccatcaacagagccaacgtgtacgtgggtttccaggtacaactcgacctg
acgggaatctttatgcatggcaagatccccacgctgaagatctccctcattcagatcttt
agggctcacttgtggcagaagattcatgagagcattgtcatggatctctgtcaggtgttt
gatcaggagctggatgctcttgagattgagacggtgcagaaggagaccattcatcccagg
aagtcatacaagatgaactcatcttgtgccgacatcctcctctttgcatcatacaagtgg
aacgtctctcggccgtctctacttgctgactccaaggacgtgatggacagcaccaccaca
cagaagtactggatcgacatccagctacgctggggtgactatgactcgcatgacatcgag
cgctacgccagggccaagttcctggactacaccaccgacaacatgagtatctacccctcc
cccacgggggtgctcattgctatcgacttggcttacaacctccacagtgcctatggtaac
tggttccctggaagcaagcctctgatccagcaggccatggccaagattatgaaggccaac
cctgccctgtacgtgctcagggagcgcatccgcaaaggtctgcagctgtactcgtctgag
cccactgagccctacctgtcctcacagaactacggagaactcttctccaaccagatcatc
tggtttgtagatgacaccaacgtctaccgagtcaccatccacaagacttttgaaggtaac
ttgaccacaaagcccatcaatggagctattttcatcttcaaccccaggactggtcagctc
ttcctcaagatcattcacacatctgtgtgggctggacagaaacgtctgggacagctggcc
aaatggaagacagctgaagaagtggctgccctgattcgctccctccctgtggaggagcag
ccgaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctt
gacttccccaacatcgtgatcaaagggtctgagttgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctgatcctgaaggctacagagcctcagatggtgctgttc
aacctctacgacgactggctcaagaccatctcgtcttacacagccttctcccgactcatc
ctgatcctcagagcactgcacgtcaacaatgaccgggccaaggtgatcctgaaacctgat
aagaccactatcaccgagcctcatcacatctggcccacgctcactgacgaagagtggatc
aaggtggaagtgcaactgaaagatctcattctggcagattatgggaaaaagaacaatgtg
aatgtggcttcactgacccagtctgagatccgtgacatcatcctgggtatggagatctcc
gctccgtcacagcagcgtcagcagattgcggagattgagaagcagactaaagagcagtcg
cagctcacagccacgcagacccgaactgtcaacaagcacggcgacgagatcatcacatcc
accacctccaactatgagacccagaccttctcctctaagacagagtggagagtcagggcc
atatctgctgccaacctccacctccgaaccaaccacatctacgtgtcatccgacgacatc
aaggagacgggctacacatacatcctgcccaagaatgtcctcaaaaagtttatctgcatc
tcagatctgcgagcacagattgcaggttacctgtatggcaccagtccaccagataacccc
caggtgaaggagatccgttgtattgtcatggtaccacagtggggtacacaccagactgtc
cacctgcccaaccagctgcccggtcatgaatatcttaaagaaatggagcccctcggctgg
atccatacccagcctaatgagtcgccacagctgtccccacaggatgtcaccacccatgca
aaggtcatggctgacaacccttcgtgggatggagagaagaccatcatcatcacttgcagc
ttcaccccaggctcgtgcacgcttacagcctacaagctgacacccagtggctatgagtgg
ggtcggcagaacaccgacaagggcaacaaccctaaaggctacctgccatcgcactatgaa
agagtgcagatgctgctctctgatcgcttcctgggcttcttcatggtgcctggccaggtg
tcctggaactacaacttcatgggtgttcgtcatgaccccaacatgaagtacgacctgcag
ctggccaaccccaaggagttctaccatgaagtccatcggccctcacacttcctaaacttt
gcctcgctgcaggagggtgagatctataatgcagaccgggaggacatgtatgcctga
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integrated database retrieval system
