Etheostoma spectabile (orangethroat darter): 116677569
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Entry
116677569 CDS
T08457
Name
(RefSeq) laminin subunit beta-4-like isoform X1
KO
K06245
laminin, beta 4
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116677569
04518 Integrin signaling
116677569
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116677569
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
LAMB4
F5_F8_type_C
NPIP
Motif
Other DBs
NCBI-GeneID:
116677569
NCBI-ProteinID:
XP_032363853
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MIFIFFTLFLPEALLQDLRDQCPGGSCNPQLGDLMVGRAAQLSASSTCGLDGPENYCILG
YLEEKRKCFTCDSQLPYNLHSNPNSHRIENVITTFDPERKMKWWQSENGVHEVSIQLDLE
TVFQFSHLVLTFKSFRPAAMLVERSKDFGRSWKVFRYFAEDCLLHFPSVSDQPAKSVDDV
VCDSRYSGSDPSTDGEVVLKALDPVFEIENLNAPHIQDLITLTNIRVNFTRLFMLGDTVL
GRRRRNPQDKYYYALYNMVVRGSCFCHGHASQCTPVDGGQGSVFTMTAMVQGRCGCQHNT
AGDNCEKCQDFHHDSPWRPGGENNANICRRCNCHGHSDSCHFDSARFQATGSISGGICDD
CRHDRTGPQCDQCRPFLYRDPQRAADDPHGCIPCDCDPAGSQDGGLCDALSGHCVCKENV
EGQRCDRCKHGFFNLTQDNPTGCQVCRCHFLGSVGSCDQLTGSCECDHLAMGPLCDRCLE
GFWGLGNSVFRCSPCDCDVGGAYSTTCSPEDGQCQCLPNMVGRRCSAPAPGYFLPLLDYF
LYEAELAAPLHGGSSPPSTPPSSSSPLVNPGALPRCEKYFRDQGYDFKFTNGRVVLVRRT
PGPARRRRQQRGFPLDPGHPLQIIPRQRTADRPVTWTGLGFVRVLEGAGLRFTVDNVPSS
MDYQLVIRYQPESPSDWLASVSIIAASLGDGRCHSGPTGSKTLILPGNSRGRILDSALCL
NTGGRYVVNVVFNRHPGSDASSSSHILIDSMGLIPSVQSVPDFCSQRDLNSFQHVRCVGL
AAELGPQGTAGVCEGLIQSMSARVHNGAVLCRCDVIGSVGPSCSDLGGFCECKPNVIGRC
CDTCAPLTFGFGLDGCKPCECDPRGSQAELCDQVRGQCVCRLEVTGRRCDRCQGGFWGFP
SCQPCECNGLSEECDEETGECLNCREQATGAHCDRCVDGYYGNLALRTPCQPCLCPDARS
SGRFFATSCQHDPQSLGVTCDCWEGHTGPSCDRCSPGFHGDLSLPGARCEECPCNNNISP
ADSNACDSVTGECLRCLHNTMGPRCQDCRPGYYGNALDQDCSECSCYRPGTEVTQCPLES
PCFCDSRTGQCPCRTGVTGVLCDQCEDGYWNLGRASGCQPCSCDPVNSLSNTCNKVTGQC
PCRPEFGGRQCDECGENHFGNPDLQCISCDCNLEGTERPSCDPEAGECLCRPGITGIFCN
ECAPGHDSAFPACAECHQCTTLWARSVTDVQQAAQRIKTFITVHGEDLRPRDGCQWQQML
EMQSKLDGLANLTRLSPPSLEKLEKLCAMTGKVKDSINPKMILVDPSALLNTDINNIRLE
FSTLLNNLKKKVTEAPGGERGVQHSEDLFFLLLDKIQKLHTIFMLDEKRVRRASKALEVS
MDTRQEVKRKLSMCGGGGGDRVLLENKVKELSVLDLTGKICGGPGLEHCSGCGGALCGSL
DLGNGDCGGPHCDGVLPVSQMASETAERAKNQLVLLPSSLQESQTKIKDTQRAAQDTKDR
AKDLQDQITDSMDSLEREKNQTKHLIQRVKHYLTDETVPPEDIEKMSQAVLAVQFPGTPD
QIRSMIRDINNLLSNTVNVHDDLRSQQETAKTARDLLQRARELRERTKNIDVTEINKDIS
EAEKAQDHAVRDLDAASRDKDAAQDHIQDMKDKLDQVETKLMNRPKDLQDELEALIEKTD
QNKEMARDAYEAADSAVNQTTDIKPELQDVKRLFQLLKQKHSKQTVQSEAGERLKNIVEE
AEKMKKQVEDKLQQIQDLEQKIQKLIQNKEAKAAEVSVLLDTADSLQQEISRRAEGYNLC
SN
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcatcttcttcaccctttttcttccagaagctctgcttcaggacctccgggac
cagtgtcccgggggctcctgtaacccccagcttggcgacctgatggtgggtcgcgcagca
cagctgtcagcctcgtctacctgcggtctggacggaccagaaaactactgcatcctcggg
tacctggaggagaagagaaaatgtttcacatgtgactctcagctgccgtacaatctccat
agcaaccctaacagccaccgcatcgagaacgtcattacgacctttgaccctgaaaggaaa
atgaaatggtggcagtctgagaatggagttcatgaggtcagcattcagctggatctggag
accgtgttccagttcagtcacctggtcctcaccttcaagagtttccgtccggcggccatg
ttggtggagcgatcgaaggattttggacgaagctggaaagtttttcgttattttgcagaa
gactgtttgcttcatttcccttcagtgtcagatcagccggccaaaagcgttgacgacgtg
gtctgtgacagcaggtactctggttcagatccatccactgatggagaggttgtgctgaaa
gctcttgatcctgtgtttgaaatagaaaacctgaacgcaccacacatccaagatctgatc
accttgacaaatatccgtgtgaacttcactcgtctgttcatgttgggcgacacggtgctg
gggcgaagacgcaggaaccctcaggacaaatattactacgctctttacaacatggtggtc
cgaggaagctgcttctgtcacggacacgccagccaatgtacgcctgtggacggaggacaa
gggagtgtctttaccatgactgccatggttcaaggtcgatgtggttgtcagcacaacaca
gccggagataactgtgagaaatgtcaggactttcaccacgactccccctggaggcctgga
ggagaaaacaacgccaacatctgcaggaggtgtaactgtcacggtcactcagactcgtgt
cactttgactcggctcgtttccaagcaacgggcagcatcagcggcggtatctgtgacgac
tgtcgtcatgacaggacagggcctcagtgtgaccaatgccgacccttcctgtatcgagat
ccacagagagcggccgacgacccacacggctgcataccgtgtgactgcgacccggcaggt
tctcaggacggcggtctctgtgacgccctgagtggccattgcgtctgtaaagaaaacgtg
gagggtcaacgttgtgatcgctgtaaacacggcttcttcaatctgacacaggacaatccc
accggctgtcaggtgtgcaggtgtcattttttgggaagtgttgggtcttgtgatcagctg
acaggaagttgtgaatgtgaccatttggcaatgggaccgctgtgtgatcgatgtctggaa
ggtttctggggtttgggaaactctgtgttcaggtgttcgccgtgcgactgcgatgtggga
ggagcttacagcaccacgtgttctccagaggacggacagtgtcagtgtttacccaacatg
gtgggtcggcgctgctccgcccctgcccccggctacttcctgcctcttttggactacttc
ctgtatgaggcggagctcgctgccccgctgcacggaggaagctctcctccatctactcct
ccttcttcttcttctcctctggtcaacccaggtgctttgccgcggtgtgagaagtatttc
agagaccagggttatgacttcaagttcactaacggacgagttgttctggttcggaggact
ccaggacccgcccgcaggaggagacagcagagaggcttccctctggacccgggtcacccc
ctgcagatcattccgcgtcagaggacagctgatcgccccgtcacctggaccggtctggga
tttgtcagagtgttggagggggcggggcttaggttcactgtggacaacgtcccgtcgtct
atggattaccagcttgtgattcgttaccagccagagtctccgtctgattggctggcttca
gtcagcatcatcgcggcgtcgctaggcgacggcagatgccacagcggcccgacaggaagt
aaaactctgattcttcctggaaactctagaggacgtattctggactcggcgttgtgtctg
aacacaggtggtcggtacgttgtgaacgttgtcttcaacagacatccgggatcggacgcc
tcgtccagctcacacatcctgatcgactcgatgggtctgatccccagcgtccagtccgtc
cctgacttctgctcccagcgtgacctcaactctttccaacacgttcgctgcgtcggattg
gctgctgagctcggcccgcagggcacggctggagtctgcgagggactcatccagagcatg
tcggcacgagtccacaacggagctgttttgtgcaggtgtgacgtcatcggctctgttgga
ccatcttgcagtgacctgggagggttctgtgaatgtaaacccaatgtgattggacgttgc
tgtgatacctgtgcaccactgacgtttggtttcggactagacggctgcaaaccatgtgag
tgtgaccctcgaggttcgcaagcggagctgtgtgatcaggttagaggtcagtgtgtgtgt
cgtctggaggtcacaggtcgacgctgtgaccgctgccagggggggttctgggggttccct
tcctgtcaaccctgtgaatgtaacggactgtcagaggagtgtgacgaagaaaccggagag
tgtctgaactgcagggagcaggccaccggagcccactgtgacaggtgtgtggatggttac
tatggtaaccttgcattgagaacaccctgtcagccctgcctgtgtccagatgctcggagc
agcggacgtttcttcgccacctcttgtcaacacgacccacaatccctcggtgtgacatgt
gactgctgggaggggcacacaggtccgagctgcgacagatgcagccctggtttccatggc
gacctgtcgttgcccggtgcccggtgtgaggagtgtccctgcaacaacaacatcagcccg
gccgacagcaacgcgtgcgacagcgtgacaggagaatgtcttcgatgtctccacaacacg
atgggaccccgctgccaggactgcaggcctggttactacggcaacgccctggaccaggac
tgtagtgagtgctcgtgttaccggccggggacggaggtgacccaatgtcctctggagagt
ccctgcttctgtgattcgaggacgggacagtgtccctgcaggacgggggtgacgggcgtc
ctctgtgaccagtgtgaggacggatactggaacctgggcagggcctcggggtgtcaaccc
tgcagctgtgatcctgttaactctctgtccaacacctgtaacaaggtgacggggcagtgt
ccgtgccgtcctgagtttggaggaagacagtgtgacgaatgtggagaaaatcactttggg
aacccagacctgcagtgcatctcttgtgactgtaacttggagggaaccgagcgtccgtca
tgtgaccctgaggccggtgagtgtctttgtcggcccggcatcaccggtatcttctgtaat
gagtgtgcccctggacatgactcggcgttcccggcctgtgcagagtgccaccagtgcacc
accctctgggccagaagtgtgaccgatgtccagcaagccgcccagaggatcaagaccttc
atcactgtccatggcgaggacctgcggcccagagacggttgccaatggcaacaaatgctg
gagatgcagtccaagctggacggccttgccaacctgacgagactctccccgccaagtctg
gagaagctggagaaactgtgtgccatgactgggaaggtgaaggacagcatcaaccccaaa
atgattctggttgacccgtctgctctcctcaacacggacatcaacaacattcgtctagag
ttcagcaccctgctgaataacctgaagaagaaagtcaccgaggccccgggcggtgaacgg
ggggttcaacacagtgaggatttattctttcttctgctggataagatccagaagcttcac
accatcttcatgttggatgagaagagagtgagaagggccagcaaagctctggaggtttcc
atggacacaagacaggaagttaaacgcaaactgagcatgtgcggcggaggcggcggagac
cgggtgctgctggagaacaaggtcaaagagctcagcgtgctcgaccttacaggaaagatc
tgtggaggaccaggtctggagcactgttccggctgtgggggagctttgtgtggatccctg
gatctgggaaacggggactgtggtggcccacactgtgacggagtgcttcctgtgagtcag
atggcatcagagacagcagagagggccaagaatcaactggtcctgctgccatccagttta
caggagtcccagaccaagatcaaagatacccagcgagcagcacaggacaccaaagaccgg
gccaaagacctccaggaccagatcactgacagcatggactccctggagagagagaagaac
cagaccaagcacctgatccagcgagtcaaacactacctgacggatgagacggttcctcca
gaggacattgagaaaatgtcccaagctgttttggccgtccagtttccaggaacaccagat
cagatccgatcaatgatcagagacatcaacaatctgctgtccaacaccgtcaacgtccac
gacgacctgaggtcccagcaggagaccgccaagactgcccgagacctgctgcagagagct
cgggaactcagggagcggacaaagaacattgacgtgactgagatcaacaaagacatttct
gaagcagagaaagctcaggaccacgccgtcagagacctggacgcagccagccgagataaa
gacgcggcccaagaccacatccaagatatgaaggacaaactggaccaagttgagacaaag
ttgatgaatcgacctaaagatctgcaggacgagctcgaagccctgatagagaagactgac
cagaacaaagagatggccagagacgcctatgaggctgcagactctgctgtaaaccagacc
accgacatcaaaccagagctgcaagacgtgaagaggctgtttcagcttttaaagcagaaa
cactccaagcagacagttcagagtgaagcgggagaacgtctgaagaacattgtggaggag
gcggagaagatgaagaaacaggtggaggacaaattgcaacagatacaagatctggagcag
aagatccagaagctgatccagaacaaagaggccaaagcagctgaagtctccgtgttgttg
gacacggcggattcacttcaacaggaaatctccagacgggccgaaggatacaacctctgt
agcaactaa
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integrated database retrieval system
