Etheostoma spectabile (orangethroat darter): 116679334
Help
Entry
116679334 CDS
T08457
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116679334
04518 Integrin signaling
116679334
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116679334
09142 Cell motility
04820 Cytoskeleton in muscle cells
116679334
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116679334
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116679334
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116679334
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116679334
Hyaluronan
Extracellular matrix or blood plasma proteins
116679334
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
116679334
NCBI-ProteinID:
XP_032364892
LinkDB
All DBs
Position
Unknown
AA seq
1512 aa
AA seq
DB search
MGRTSLVLSFIVAACFSGIAAQNKGCEKANVADIVFLVDGSSSISPGNFQEVRSFLRNFI
KALDIGPNKVRIGLAQYSDEPQPVFLLKDHSDKRSLLAAVERIQLLGGGGTETGKAIEFL
QKQFFTKEAGSRADQRVPQIAVVITDEESSDNVKAPARKLRQDGVLVFGVGVGGTNREQL
ESIANYPPDRFMHSFDSYQALQRRTDELLDTVCGSVVEQKEALAERFADVFFLVDSNIAP
AQFTLFRNDLLKLINQINPGASTYRIGMAQYGEDTQVQFLLNAHQTKQELQAAVKGFRLR
PQPNRPRNLGRALQNANTRFFTKEAGGRAHLGARQFLVVVSGRDSDDLVYQDARKIKSAG
VTVVGMSAGASLDALYRFASSGYAFDSPKVLILKESIVTEIKDDITEDCKGANIADIVFI
VDESGSIGAENFQLVRSFLHSLVGSLDVRPNKVQVGIVTYNEEPKAQVYLNTFDNRDEIL
QFISRLPYTEGGTNTGAALNFTRDYIFIEESGSRRRKGVQQVAVVITDGESQDGVLDAAA
SLRREDVNVYAVGIGNANKEELEQMASHPVDRHVFKVDSFTELRALTHSLQKVVCENIIH
QAVRVSVRDSEAKKACVQKDEADIFFLMDDSGSIGNQDFEDMRNFIIKFFRTFNIGPDHV
RVGLVKYADDPSLQFDLTASSDVDKMETRVKNIVHQGGGTETGKALKSMGQHFRRAKQTR
GHKVPEYLIVITDGESTDDVKAPAEELRLQGVTIFAIGVKDYNQSELVDIAGDTKRTIQV
NNFDALKSINNDIIEEICSEDVCRDVQGDIFFLVDGSESISKEDFKKMKEFMKSVISKPA
IEQSKVHVGLMQFSSDNRLEFPLGRYYGRDEILTSIDGMKQLDQGTLTGKALTQVSQYFD
VNNGGRPDVSQRLIVITDGEAKDEVLGPAEALRKKGVVVYAIGVGEANTTQLLDISGSPD
RVYSKKDFDALKDLESQVSLELCQQNCTIKTADIIFLVDSSTSIDGTEYESMRIFMETIV
KQTTVGKDMTRFGLISYSDEPQSHFSLRDYDTKRKVLEAIPKQKPKEGDTHTGEALQFSL
EYFDVAHGGRKASNVPQILMVITDGXATNPYILKEHSDALRANGITVISVGVKEAKIDQL
ETMAGGDTSKVFFVDNFKALETLYRKMSSVLCNSTKPACQIGDVVFLLDRSSSIDETKHN
IMKNFTTNLVDSFEVGEEFVHFGLCQFSTTPNDEFYLNEYFNKKDLQTEILKANXTGGDT
YLGRALDHIKDYFDKSKGSRDQVPKNLVLITDGDSHDDVEDPADVLRDMNIEVFAIGVGD
VHDLQLLQIAGTPERLFTVRNYDVLHNIKQKVVDVMCDDPNPPPLQPTSSPRPPTPPPPP
KDCTIDIAIGFDISQRTGAPGELLVSGQAKLQNFLPKILKYISSLEGLCCVGPAPIKPNI
AFLVVDRDGRTLYDTNFEGYRADVVNKVMTLPMTQPSYFNTAMINAFKQRFKIQSKAHVK
VSVAQLANPENQ
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaccagtctggtcctcagcttcatcgtagcggcgtgtttctctggcatcgct
gctcagaataaaggttgtgaaaaagccaacgtggccgacatcgtcttcctagttgacggc
tcctccagcatcagccctgggaacttccaggaggtccggtctttcctccgcaacttcatc
aaagccctcgacatcgggcccaacaaagttcggatcgggttggcccagtacagcgatgag
ccccaacccgtgttcctgctgaaggaccactccgacaagaggtctctgctggccgccgtg
gagagaatccagctcctcggaggaggaggcactgagaccggcaaagccatcgagttcctc
cagaagcagttcttcaccaaggaggcgggaagccgagctgatcaacgggtgcctcagatc
gctgtcgttatcacggatgaggagtcctctgataacgtgaaggcacccgcccggaagctc
aggcaagacggggtcctggtgtttggcgtcggggtgggaggcaccaaccgggagcagctg
gagtccatcgccaactaccccccagatcgcttcatgcactcattcgacagctaccaggct
ctgcagaggcggacggatgagctgctggatacggtttgtggctctgtggtggagcaaaag
gaagctttggcagaaaggtttgcagatgttttcttcctggtggacagcaacatcgctcca
gcccagttcacgctttttagaaacgaccttttgaaactgatcaatcagattaaccccgga
gcgtccacctaccgtatcgggatggcgcagtacggtgaagatacgcaggttcagttcctt
ctcaatgctcatcaaactaaacaagagctccaggctgctgtcaaaggtttccgcctgcgc
ccgcaacccaaccggccccgtaacctgggccgggccctgcagaacgccaacactcgcttc
tttaccaaagaggcgggggggcgtgcgcacctgggcgcccggcagttcctggtggtcgtg
agtggaagagactcagacgatcttgtgtatcaggatgctcggaagatcaaatcagcaggg
gttaccgttgttgggatgagtgcaggtgcaagtctggatgccctgtatcgattcgccagc
tctgggtacgcgttcgattctcccaaagtactgatcctgaaggaatccatcgtgactgag
ataaaggacgacattactgaagattgcaaaggagccaacattgcagacattgtgttcatt
gttgacgagtcgggaagcattggagcggagaacttccagctggtgcgctcgttcctgcac
tcccttgtgggcagcctggacgtaaggccgaataaagtccaagtaggcatcgttacgtac
aacgaggagcccaaagcccaggtctacctcaacacgttcgataacagggacgaaatcctg
cagttcatcagccggctgccttacactgaaggggggacgaacaccggagctgccctgaac
ttcacgcgggactacatcttcattgaggagtcgggcagcaggagaaggaagggcgtccag
caggtggcggtggtgatcaccgacggggaatcccaggacggcgtgcttgacgcagcagcc
agtctccgtcgggaggacgtcaacgtgtacgctgtagggatcggcaacgccaacaaggaa
gaactggagcagatggcgtctcaccccgtcgataggcatgtcttcaaggtggacagtttc
accgagctgagggcgctgacgcacagcctgcagaaagtcgtctgcgaaaacatcatccat
caagccgtcagagtcagcgtgagggactccgaggccaaaaaagcatgtgtacaaaaggat
gaagcggacatcttcttcctgatggacgactcgggaagcattgggaaccaagactttgaa
gacatgaggaacttcatcatcaagttttttcgtaccttcaacatcgggccggaccacgtc
cgcgtcgggctcgtgaaatatgctgatgatccatctttgcaatttgacctgacggcctcc
tcagatgttgataaaatggagacacgcgtgaagaatattgtacatcaaggcggtgggaca
gagacaggaaaagccctaaaatccatgggccagcactttaggagagcgaagcaaacccgt
ggtcacaaagtcccagagtacctgatcgtcatcacagatggggagtccactgacgacgtc
aaggctccagccgaagagctgaggctgcagggggtcaccatcttcgccatcggggttaaa
gactacaaccaatcagagctggtagatatcgcgggcgacaccaagaggactatccaggtc
aataattttgatgccttgaaatctatcaacaacgacatcatcgaagaaatctgttctgaa
gacgtttgcagagatgtacagggagacatatttttcttagtggacggctccgagagcatc
tctaaggaggacttcaagaaaatgaaagagttcatgaaaagtgtcatcagcaagccggcc
atcgagcagagtaaggtgcacgtcggtctcatgcagttcagcagtgacaaccggctggag
tttcccctcggccgatactacggcagagatgagatcctcacctccatcgatggtatgaag
cagctggaccagggcaccctcacagggaaggccctcactcaggtgtcacagtatttcgat
gtgaacaacggggggcgtccggacgtcagtcagaggctgatcgtgataacagacggcgag
gccaaagacgaggtcctgggccccgctgaggccctgaggaaaaagggagtggtggtgtac
gccatcggggtgggggaggccaacaccacccagctgttggacatcagcggctccccagac
agggtgtattctaagaaagactttgatgcgctgaaggacttggagagccaggtgtctctg
gagctctgccagcaaaattgtacaattaaaaccgccgacattattttcctggtggacagc
tccacaagcatcgatggaaccgagtatgaaagcatgcggatcttcatggagacaatagtg
aaacaaaccacagttggcaaggacatgactcgttttgggctcatttcctactccgatgag
ccccagtctcacttttccttgcgtgactacgacaccaaacgaaaagttctggaagcgata
ccgaagcagaagccgaaagaaggagacacccacacgggcgaggccttgcagttctctttg
gagtacttcgacgttgcacacgggggccgtaaagcatcgaatgtccctcagattctcatg
gtgatcaccgacgggnccgccaccaacccgtacatcttaaaggagcactccgacgcgctg
cgagccaacgggatcaccgtcatcagcgtcggagtcaaagaggcgaaaattgatcagctg
gagactatggccgggggagacacatccaaagttttctttgtggacaattttaaggctctg
gaaactctgtatagaaaaatgtcttctgtcctctgcaactccacaaagccagcttgccag
attggcgatgtcgtcttcctactggatcgttctagcagcatcgacgaaaccaaacacaac
atcatgaaaaacttcacgacaaacctagtcgacagcttcgaagtgggtgaagagtttgtg
cattttggactctgccagttcagcaccacgcctaacgatgagttctacctcaacgagtac
ttcaataagaaggatttacaaaccgaaatccttaaggccaatnacacagggggagacacg
tacttaggcagagccttggaccacattaaggattacttcgacaagtccaagggcagccga
gaccaggtccccaaaaacctggtcctgataacagatggggactctcatgatgacgtggag
gacccggctgacgttctcagggacatgaacatcgaggtgtttgccatcggcgttggagac
gtccacgacctgcagctcctgcagatcgccggcacccccgagaggctgttcaccgtgcgc
aactacgatgtcttgcacaacatcaagcaaaaggtggtcgacgtcatgtgcgatgaccca
aaccctcctccactccagccgacatcatccccacgaccccccacgccgccgccacccccg
aaagactgcaccattgatatcgccataggattcgatatttctcaaaggaccggagcccct
ggtgagcttctggtcagcggccaggccaagctgcagaacttcctgccaaagatcctcaag
tacatttcctcattagaaggcctgtgctgtgtcggccccgcccccatcaagcccaacatc
gccttcctagtggtagatagagatgggcgtaccttgtacgacacaaactttgagggctac
agggcggacgtggtgaacaaagtcatgaccctgcccatgacacaaccttcctatttcaac
acggccatgataaacgccttcaagcagaggttcaagatccagtccaaagctcatgtgaag
gtgagtgtggcacagctggcaaacccagaaaatcaatga
DBGET
integrated database retrieval system
