Etheostoma spectabile (orangethroat darter): 116684671
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Entry
116684671 CDS
T08457
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04382
Cornified envelope formation
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116684671
04518 Integrin signaling
116684671
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116684671
09142 Cell motility
04820 Cytoskeleton in muscle cells
116684671
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116684671
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116684671
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116684671
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116684671
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116684671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116684671
NCBI-ProteinID:
XP_032366041
LinkDB
All DBs
Position
Unknown
AA seq
1665 aa
AA seq
DB search
MEAPGGPRRGICPLVLVLVLVLVCSSAAPGRAERVCHCSGASLCHCDGVKGQKGETGYLG
YDGLPGGIGYPGYEGHQGSPGEKGSLGPAGGAGLKGSRGLPGKPGFPGPPGLPGLPGHEG
PLGRPGLPGCNGTKGDVGYPGFPGVSGPVGFQGAPGLRGVKGDRSPVPLYLDIKGEPGPR
GPPGPEGLSGDPGEPGLPGPPGPSGLPGRPGSAGTAGEKGQEGPSPVVPGPRGFKGDRGP
PGIPGQKGIKLYAEGPRELKGEPGEVGIKGCRGLLGLPGKRGDKGAKGGRGDPGSLGKPG
KDGLPGDLGEQGDAGDSGYLGPPGIEGARGEKGDRGGPGLPGEMVWIPTFVQGQRGVPGP
RGPPGVPGEQGLIGFPGLMGVPGVAPTGPPGPQGPPGSLGSKGEMGEPGPLTVGPPGQDG
VPGRRGVEGEPGEPGIPEFLPGGAGSPGAKGLKAPWGSLQQQSAKGEVCFACSPVLGDPG
PPGPPGEPGEDGVDGSDGFPGPKGHKGVKGVEGPPGPQGPFGMPGLPGTPGPVGDPGIMQ
RVGQKGEDGDVGQPGLPGFDGTDGSSGFAGPKGVLGQKGNPGPLGPKGDRGPLGETGLRG
LIGQIGPPGPPGIGLPGPPGSKGNAGVLGKRGDPGGPGEKGSPGEINTSPGDPGQKGEKG
LPGNPGPEGGTGRPGVPGFVGPKGERGENGFSVQGPPGFPGVKGTKGPPGVPGLTSFGIK
GRAGPSGPPGMPGPKGGSGLGFPGQQGQSGPQGEDGSVGPHGNPGGQGPDGAPGPPGQDG
PPGPKGRSGLDGLRGPVGLVGPCLPGSPGPERADGPMGFIGFTGMQGRKGPHGDPGGPGV
GPPGSQGPQGAPGWDGPPGPAGDGGPKGLRGSNGETGSTGPRGDVGPPGALGSPGDDGQP
GETGPAGPKGETGVDGTRSDPGPPGPPGNRGETGPKGFPTAVEMYGDPGDPGDPGPPGLT
GSKGETGIQGPQGLDGSAGRPGTCGPQGPSGGLGRDGEDGPPGPPGPSGIQGPMGRPGSK
GLKGDTGPCGERGPEGYPGPGGLKGAKGEPSTPGPGSKGVPGEKGNQGFSGCLGTKGLPG
TRGTVGLPGNCGPCGPQGDSGSPGCRGPPGSPGEKGCNGPPGDNGPAGPPGLSGNKGAPG
DPGPAGPRGTQGQDGIPGPPGEKGAMGAPGRGPRGTDGKTGPPGCVGDKGPPGACGPPGP
PGPGGHPGCHGAPGPPGPPGSPGTEGACTEGGKGEKGFAGQRGPKGPQGFRGPPGPPGPG
FKGEKGSKGATGCRGPPGTRGDPGPRGQPGEERPPGPRGQKGQMGDLGVTGPVGMKGDTG
PPGDQGSPGTPGPPGPRGRRGNDTHPEVILVPGDQGPPGVKGNPGPTGPPGARGTPGGPG
LKGFIGTVGPRGRDGLPGLKGGRGDRGPHGAKGVSGSRGPVGAKGVAGIPGPCRDTNEAD
GFLFTKHSQTVSVPQCPAGSTQMYSGYSLLFINGNNRAHGQDLGTLGSCLPRFTTMPFLF
CNTDNTCRYASRNDYSYWLSTDEPLPANMPMISGDSLRTYISRCSVCEARANMIAVHSQT
SDVPACPSGWDSLWFGYSFVMETGVGAEGSGQPLASPGSCLENFRKIPFIECHGRGTCNY
YTDSYSYWLAALNPRDMFSKPKPQTEKGKXSRDLISRCRVCMKQL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgggcggcccgcggcgggggatctgcccgcttgtcctggtcctggtcctg
gtcctggtctgcagctccgccgctccgggacgcgccgagagggtgtgtcactgcagcgga
gcgtctctatgtcactgtgacggggtcaaagggcaaaagggtgaaactggttaccttgga
tacgacgggcttcctggagggattggttaccctggatacgagggtcaccagggctcacct
ggagaaaagggttctctgggaccagcaggaggtgcaggactgaaaggctctcggggactt
ccaggaaaaccaggtttcccaggacctccaggactgccgggacttcctggacatgaagga
cccctcggtcgccctggactcccaggatgcaacgggacaaagggggacgtcgggtacccg
gggttccccggggtttcaggacctgtcggctttcagggggcaccaggactgcgaggtgta
aagggagaccggtcgcccgttcccctctatctggatattaaaggagaaccgggaccacga
ggaccacctggaccagagggactgagtggagacccaggtgaacccggcctgccaggaccc
ccaggaccctctggacttcctggacgtcccgggtcagcggggaccgccggagaaaagggt
caggaggggcccagtcccgtggtcccggggccccgaggattcaagggtgaccgcggcccc
ccagggatcccgggacagaaaggaatcaaactgtatgctgaaggacccagagaactgaag
ggagaaccaggtgaagttggaattaaaggttgtcgtggacttctggggttgccggggaaa
cggggggataaaggtgccaagggtgggcgaggtgatcccggctccctgggtaaaccgggg
aaggacggactcccaggagatctaggagaacagggagacgccggggattctgggtacctc
ggtcctccggggattgaaggagccaggggagagaaaggagaccgggggggaccaggtctt
ccaggagagatggtctggatcccgacgtttgtgcagggccagcggggggtccccgggccc
cgaggccccccaggagtcccaggagaacaaggactcatcgggtttcctggtctgatgggc
gtcccaggtgtggctcccacgggtccaccgggcccccaggggccacctggctcactggga
agcaaaggagaaatgggagagccggggcccctcaccgtcgggcccccaggacaggacggg
gtcccgggaaggcgtggagtcgaaggagaacctggagaaccaggaataccagagttcctg
ccgggaggtgctggttctcctggagctaaaggtctaaaggcaccgtggggttccctgcag
cagcagagtgcgaagggcgaggtgtgcttcgcctgttcacctgtcctcggcgaccccgga
cccccgggtccaccaggagagccaggggaagacggggtggacggatcagacggttttcca
ggacccaaaggacacaaaggagtcaaaggtgttgaaggaccacctggtccacagggcccg
tttggcatgcccggcctcccggggaccccgggacctgttggcgaccctgggatcatgcag
agggtcgggcagaagggcgaggatggggacgtggggcagccgggactgcccggttttgat
gggacagacggatcttctggattcgcaggaccgaaaggtgttctgggacagaaaggaaac
cccgggcctctggggcctaaaggtgacaggggcccgctcggggagactggtctcagagga
ctaataggacagataggacctccaggacctcctggaattggccttccagggcctccggga
tctaaaggcaatgcgggagtcctggggaagcgaggagatcctggaggaccaggtgaaaaa
ggttctcctggtgaaatcaacacctctccaggagatccgggtcagaaaggagagaaaggt
ttacctggaaaccctggacctgaaggtgggacaggacgtccaggtgttccaggatttgtt
ggtccgaagggagaaagaggagagaatggattctcagtccagggtcctccaggcttccca
ggggtcaaaggaaccaagggccctccaggagttccaggtttaacaagttttggtatcaag
ggacgggccggcccgtcaggccccccagggatgccgggccccaaggggggcagcggtctg
ggtttcccaggccagcagggtcagtcaggaccccagggagaagacggctctgttgggccc
cacggaaaccccggaggccaaggaccggatggagctccaggacctccaggacaagacgga
ccccccggacccaaaggtcggagcggtctggatgggttacggggtcctgttggtttggtt
ggaccctgtttacctggatctcctggacctgaaagagcggacggaccaatgggattcatc
ggatttacagggatgcagggccggaagggcccgcacggggaccctggggggccgggcgtg
gggcccccggggtcccaggggcctcagggggcccctgggtgggatggaccaccgggacca
gcaggagacggtggacccaagggcctgagagggagtaacggggagacaggaagcacaggt
cccagaggagatgtgggtcctccaggagccctcgggagtccaggggatgacgggcaacca
ggagaaactggaccagcaggacccaaaggggagacgggtgtcgatgggaccaggagtgat
ccgggacctcctgggcctccggggaaccgaggagaaaccggacccaaaggattcccgacc
gctgtggagatgtacggagaccctggcgaccctggagatcctgggcccccaggtctcact
ggtagtaaaggagagacaggcatccaggggccacagggcctcgacggcagcgctgggaga
cctgggacttgtggcccccaaggaccttctggaggcctgggcagagacggagaggatggt
ccccctggtcctcctggacccagcgggatacaaggaccgatggggaggccaggttctaaa
ggtctgaaaggtgataccgggccttgtggggaacgtggaccagaaggatatccaggacca
ggaggacttaaaggtgctaaaggggaaccgagcacacctggaccaggatctaaaggtgtc
ccaggagagaaggggaatcaggggttttcaggatgtctgggtacgaaggggcttccagga
accaggggaaccgttggtcttccaggaaactgtggaccctgtggcccccaaggagattct
ggatccccgggatgcagaggtcctcctgggtctcctggtgaaaagggttgtaatggtcct
ccgggggacaacggccctgcaggaccccctggactctcaggtaacaagggggctcctgga
gatccgggtccagctggtccccgaggaacacaggggcaggacgggatacctggacctcca
ggagagaaaggagccatgggagctcctggaagaggaccccggggcacagatgggaagaca
ggtccacctggatgtgttggggataagggtcctcccggtgcctgcggtccacctggtcct
cctggtcctgggggacacccagggtgtcatggtgctcctggcccccccggtcctcctggt
tctcctggcacggagggagcctgcactgaaggaggaaaaggagaaaagggattcgccgga
caacggggacccaaaggtccacagggctttcggggtcctcctggtcctccaggtcctggc
tttaaaggagagaagggatctaaaggagccacaggatgccgaggaccacctggtacccgt
ggtgaccctggtcctcgaggccagccgggtgaagaaagaccaccaggtccacgtggacag
aaaggccagatgggggaccttggtgtcacgggaccagttggtatgaagggggacaccgga
ccaccgggggaccagggctcaccaggtactccaggaccacctgggccgagaggccggaga
gggaatgacacacacccggaggtgattctggtgcctggagaccaaggccccccaggagta
aagggaaacccaggaccgacaggaccaccaggggcccgaggaacacctggaggtccaggt
ttaaagggcttcatagggacggttggtcccagaggacgagatggtcttcctggactgaaa
gggggtcggggagaccgcggaccccatggagcaaaaggtgtctcaggttcacgaggtccg
gtgggtgctaaaggtgttgccgggataccgggtccctgcagagacacaaatgaggccgac
ggcttcctgttcaccaaacacagccagaccgtctcagtcccacaatgccctgcaggatcc
actcagatgtacagcggctactcgctgctgttcatcaacgggaacaaccgcgcccacgga
caagacctggggacattaggtagttgtctacctcgcttcaccaccatgcccttcctgttc
tgtaacaccgacaacacctgtcgctacgcctcgcgcaacgactactcctattggctgtcc
actgacgaaccgctgcccgccaacatgccgatgatctctggggattcactgaggacttac
atcagccggtgttctgtatgcgaggccagagccaacatgatcgctgtccacagtcagacc
agcgatgtccccgcctgtccctcgggctgggactccctctggttcggctactccttcgtc
atggaaaccggagtgggggcggaggggtcgggtcagcctctggcctctcccggatcctgt
ctggaaaacttccggaagattcccttcatcgagtgtcacggccgaggaacctgcaactac
tacaccgactcatacagctactggctggcagcgctcaacccccgcgacatgttcagcaaa
ccgaagcctcagactgaaaaaggaaagntttcccgggatctgatcagccgctgtcgagtc
tgcatgaagcaactgtga
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integrated database retrieval system
