Etheostoma spectabile (orangethroat darter): 116686120
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Entry
116686120 CDS
T08457
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04140
Autophagy - animal
esp04148
Efferocytosis
esp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116686120 (vps39)
04148 Efferocytosis
116686120 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116686120 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
esp04131
]
116686120 (vps39)
Membrane trafficking [BR:
esp04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
116686120 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
116686120
NCBI-ProteinID:
XP_032366960
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQTSAGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVALGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIYVWD
DKGPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLSFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILRDTRMAEEYCHGHYNSLVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALHVLELHHSKLNTTKAINLLP
ANTQIREIQVFLESVLEERAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSACPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtatgaaccagtgcctattttggagaagcttcctcttcagattgactgt
ctcgcggcctgggaggactggctgctcgtgggaacaaagccagggcatcttcttctctac
cggataaagaaggatgcaggcaccaaccgtttcgaggtgacactggaaaaatccaataag
aacttctcaaagaagattcagcagctctacgttgtctctcagtacaaaattcttgtcagt
cttctagagaacaacatccacgtccatgacctcctcaccttccagcagatcacggtggtg
tccaaagccaaaggagccacgctctttgcctgtgacctgcagcaaaccagcgcaggagag
gaaaggttgagaatgtgtgtcgcagtgaagaagaaactccagctgtattactggaaggac
agagagttccacgagctgcagggggactttggtgcaccagatattccaaagtccatggct
tggtgtgaaaactccatatgtgttggtttcaagcgagactattacctcattcggatggat
ggccgtggctccatcaaggagctcttccccactgggaaacagttggagcctctggttgcc
ccactggctgatgggaaggtggctcttggccaggatgacctaaccgtagtgctaaatgaa
gagggcgtttgcacccagaagtgtgccctgaactggaccgacatccctatagcaatggag
caccagcctccgtacatcatagcggttctccctcggtacgtggagatccggacgtttgag
ccgaggctgctggtgcagagtgtggagctgcagaggccacgcttcatcacctcagcaggg
caaaatattgtgtatgttgccagcaaccactttgtgtggcgcctggtgcccgtgtcaata
gccacccagatccggcagcttcttcaggacaagcagtttgagctggctctgcagctggcg
aagatgaaggatgattcggatggtgataagaagcagcagatacatcacatccagaatctc
tatgccttcaatctgttctgccagaagagatttgatgactccatgcaggtgtttgccaaa
ctgggcacagaccccacccatgtgattggcctgtacccagacctgctcccgtcagactac
cgcaaacagctgcactaccctaaccctctgcctactctgtccggtgcagagctagagaag
gctcatctcgctctcatcgattacctcacccagaaacgcagccaccttgtgaaacagctc
aatgactctgacccttctacaacgtctccgctcatggagggcacgcctactattaaaagc
cgcaaaaagctcctgcagatcatcgataccaccctgctgaaatgttacctacacaccaac
gtggccctggtgtcgcctctccttcgtctggaaaacaaccactgccacatcgaggagagc
gagtacgtcctgaagaaggcccataaatacagcgagctcatcattctctatgagaagaaa
ggcctgcaccagaaagctctgcaggtgctgctggaccagtccaccaaggccaactctccc
ctgaagggccatgagcgaacggtccagtaccttcaaagactgggagtggagaatttggga
ataatctttgagttttctccctgggtgttgaagatctgtcctgaggatggcttgaagatc
ttcaccgaggacctgacagaggtggagactctgcccagagacaaggtgctgaactttctg
aaggaaggctttaaggagcttgccatcccatatttggagcacatcatttacgtgtgggat
gataagggcccagagtttcacaatgtgctgatccagctgtacctggagagggtccaaggc
ctcatgaaacagtacctcaactccctgcctgaaggagttccagctgttgctgcagggaag
gaggaaggggatctgggagagttcaggaacaagctgctgtcgttcctggatatttcaacc
agctatgaaccagccagactcatcagtgactttcccttcgatggtctgctggaggaacgg
gctctgctgctgggtcggatgggtaaacatgagcaggcgctcttcatctatgtgcacatc
ctgagagacacgcgcatggctgaagaatactgccacggccattacaacagtttagtcgaa
gggaataaagatgtttatctgtccttgctacgaatgtacctgtcacctcccgacgtccac
tgcctggggcccatcaagatggagttgtcggagcctcaggccaacctgcaggcggccctg
catgtcttggaactgcaccacagcaaactcaacacaaccaaggccatcaatctgctccca
gcaaacacccagatccgagagatccaggtcttcctggagagcgtcctggaggagagggcg
cagaggaagcgctgcaaccaggtgctgaagagtctgctgcaggccgagttcctcagggtg
caagaggagcggatcttccaccagcaggttaaatgtgtcattacagaggagaagacctgc
agagtctgcaagaagaaaataggaaacagtgcgtttgccaggtatcccaacggcgtggtg
gtgcattacttctgctgtaaagaccgcagcgcgtgtcccactgagcagtaa
DBGET
integrated database retrieval system
