Etheostoma spectabile (orangethroat darter): 116686763
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Entry
116686763 CDS
T08457
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
esp00535
]
116686763
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116686763
04091 Lectins [BR:
esp04091
]
116686763
Proteoglycans [BR:
esp00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
116686763
Glycosaminoglycan binding proteins [BR:
esp00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
116686763
Lectins [BR:
esp04091
]
C-Type lectins
Lecticans
116686763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
I-set
PGDH_inter
Izumo-Ig
EGF_3
Motif
Other DBs
NCBI-GeneID:
116686763
NCBI-ProteinID:
XP_032367734
LinkDB
All DBs
Position
1:complement(30473565..30501622)
Genome browser
AA seq
1579 aa
AA seq
DB search
MIRWIVLLSACLHVTSASSDYLYEDPSFMDPEDVLSVSIPLEEPQRPLLGATLLLPCYFQ
DHTVPDPGAPTIAPLVHRIKWSLVTKEKVTTILVALEGQVRISESYLDRVHLVSYPMTST
DASIKISELRSSDTGVYRCEVQHGIEDNHDIVHVQVQGMVFHYRAIMGRYTLTFEKAKTA
CSQNSAVMASPEQLQAAYDDGFHQCDAGWLSDQTVRYPIHDPRVNCYGDKEELPGVRTYG
VRDLSETYDVYCFTEKMTGRVFYTAAAEKFTFSEAVVACSNQGAQLATTGQLYLAWQGGM
DVCNAGWLGDRSVRYPINIRRPQCGGGLLGVRTVYLHTNQTGYPLPESRYDAFCYTESPD
EEGSGIIEEGSGMLSVTTATQSPEVFYRRTTTESEAIGEVETQQPTVVDFTFTESPTGMP
LPQPPNVTEFITDLIEAATARPDTGREPSKGFVMPPTGVVFHYRSGSSRYAFTFVEAQLA
CQSVGATMATPEQLQAAYEAGYHQCDAGWLLDQTVRYPVVFPRHKCAGDLGAQPGVRSYG
LRPADERFDVYCYIDRLKGEVFHVGSVEGFTYDEAASSCQEHNAILASTGELYTAWKMGF
DKCRAGWLLDRSVRYPINNPRTECGAGKSGVHTVYAHANQTSYPEVDARFDAYCFRADIL
LIANETGLNITDIQEALLNLTSITDLLRPAVPSIVSPIPVDTLGSGSGSAEFGSGSGVDG
ASGGYSGTLSGSGDLSGSGDRVTSGDRSGSGDLSGSGDGVTSGDLSGSGDHVTSGDLSGS
GDLSGSGDGVTSGDLSGSGDHVTSGDLSGSGDLSGSGYGVTSGDLSGSGDHVTSGDLSGS
GDLSGSGDLSGSGDLSGSGDRVESGDLSGSGDQFTSGDLSGTGDLAGSASAELPSGVSGF
SSADASGSALSGEGSGITVVFSGIDSIVSGEGSITGGHQEAGEGSTGIFIFPSSESGSGV
LSGSGDLSEFGSGSGFSSAESGSSSSASGQFSGMSSGFTTDQDFSGFSGLPSSSGSASGQ
SGDLSGSGDTQILLIDSELIDASNPSINKEYELSGGLLMFSGSGDISGSGILSGSASGSG
SGFLSSVTFVESGFTDMTVSSSGEQEASGVLLHSSGQKSGGHLFSGFGSSGFLSGSESGM
SGSRISESGMSGSESSTSGEEGSVTFLTGDFWTEVSGDATRSMELGQGSVQYSGEGSSSS
SGFHSGSGDTHLSTASGTFSGAFSGDLTHVAVLPSLSSEWGLTESTTGPEEALSGAELSQ
IPSGIYGTPHPVLAPAGLAAPPTATTPTSVQAPGDGKETDSLEGGFNPCEPNPCGAASCT
VEDGVVLCHEVDVCHPNPCANGATCVESADSYKCLCLPSYGGERCEIDEQQCEDGWTKFQ
GNCYLHFSDREEWLEAEQRCRDLNAHLVSIITPEEQDFVNSNTQDYQWIGLNDKTVKNDF
RWTDGTPLQFENWRPNQPDNYFNSGEDCVVMIWHENGQWNDVPCNYHLPFTCKKGPASCG
SPPEVDNAHMFGNRREEYPVNAIIRYQCNPGFTQRHPPVVRCKADGQWEKPQVECTDVKA
RRRIQRRSSRSLAASGKLH
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgattaggtggattgtgctgctgtctgcgtgtctacatgtcacctcagcatcatctgat
tacctttatgaagacccctcgtttatggacccggaggacgtgctgagtgtgagcattcct
ctggaggagccacagcgtcctctactaggggcaacgttgctactaccgtgttacttccag
gaccacactgtcccagaccccggtgctcccaccatcgctcccctcgttcatcgcatcaaa
tggagcctcgtcaccaaagaaaaagtcacgactatcctggtggccttggaaggacaggtg
cgcatcagcgagagctacctggatagggttcatctggtgagctaccctatgacttctacg
gatgctagcatcaagatatcggagttgcggtccagtgacacgggagtctaccgctgtgag
gtccagcatggcattgaggacaaccatgacatcgtccatgtgcaggttcaaggtatggtg
tttcactacagggccatcatgggacgctacactttgacttttgaaaaggcaaaaacagca
tgctcccagaacagtgcggtcatggcttcacctgaacagcttcaagcggcctacgatgac
ggattccaccagtgtgacgctggctggctctctgaccagacagtcaggtacccgatccat
gatcctcgtgtgaactgctatggtgacaaagaggagctgcctggcgtcaggacatatgga
gtgagggatctcagtgagacttacgatgtctactgtttcactgagaaaatgacaggcaga
gttttctacaccgctgctgcagaaaagttcaccttctctgaggctgtggtggcatgctcc
aatcagggagctcagttggccactactggtcaactctacctggcctggcagggtgggatg
gatgtctgtaacgccggctggctgggagacaggagcgtccgctaccccatcaacatccgt
cggccgcagtgtggagggggtctgctgggggttcgaactgtttacctccacacaaaccag
acaggatacccactacctgagtcccgttacgacgccttctgttacacagagtcccctgat
gaggaaggttcaggcatcatagaagagggaagtggcatgctgagtgttactacggcgacg
cagagcccagaggtgttctacaggaggacgaccacagagagcgaggcgatcggagaggtg
gagactcagcagcctaccgtcgtggacttcaccttcacagagagccctaccgggatgccg
ctgcctcagccgcccaacgtcactgagttcatcactgacttgatagaggcggccaccgcc
cggcccgacacaggccgagagcccagcaaaggctttgtgatgcctcctacgggtgtggtc
ttccattatcgctcaggctccagccgctacgctttcaccttcgttgaggcccagctggcc
tgccagagtgtcggagccaccatggccacgccagagcagctgcaggcagcatacgaggct
ggatatcaccagtgtgatgcaggatggttactggaccagactgtaaggtatcctgttgtt
ttccctcgacataagtgtgctggagatctgggggctcaacctggagtgcggtcatatggt
ttgaggccagcagacgagagatttgatgtgtactgctacattgatcggctcaaaggcgag
gttttccacgtgggctccgttgagggtttcacatatgatgaggctgcttctagctgtcaa
gagcacaacgccatactggcctccaccggagagctctacacagcctggaaaatgggtttc
gacaagtgccgtgctggctggctattggatcgtagcgtccgctatcccatcaacaacccc
cgcactgagtgtggagctgggaaatcaggagtacacactgtttacgctcacgccaaccag
acaagctatcctgaagttgatgccagatttgatgcatactgtttcagagcggatattcta
cttattgcaaatgaaactggactgaatatcacagatatccaggaggccctgcttaaccta
acatcaattactgatctgctgcggcctgctgttccttccatcgtctctcccatccctgtg
gatactttgggttctggctcaggctcagctgaattcggctcagggtctggggttgacggt
gcctctggaggttactctggaactttgtctggatctggagatctgtctggatctggagac
cgggtaaccagtggagatcggtctggatctggagatctgtctggatccggagacggggta
accagtggagatctttctggatctggagaccatgtaaccagtggagatctgtctggatct
ggagatctgtctggatccggagacggggtaaccagtggagatctttctggatctggagac
catgtaaccagtggagatctgtctggatctggagatctgtctggatccggatacggggta
accagtggagatctttctggatctggagaccatgtaaccagtggagatctgtctggatct
ggagatctgtctggatctggagacctttctggctctggagacttgtctggttctggagac
agggtagaatctggagatctgtctggttctggagatcaattcacctctggagacttgtct
ggtactggagacctggctggcagtgccagtgctgagctacccagtggagtgtcaggcttc
agcagtgcagatgcttctggatcagctctcagtggagaaggatccggcatcactgttgtt
ttttctggcattgacagcattgtctctggagagggctcaattacaggaggacaccaagaa
gccggagagggaagcacagggatctttatcttcccttcatctgaatcaggctcgggagtg
ctcagtggaagcggggacctctcagaatttggatctggatctggattcagctctgcagag
agtggctcttccagctctgcaagtggacagttctctggcatgtcatctggtttcaccacc
gaccaggacttttctggattcagtggtcttccatcttcctctggaagtgcaagtggccag
tcaggagatctttcaggaagtggagacactcaaattttactgatagatagtgaactgatt
gatgcatccaaccccagtatcaacaaggagtatgagcttagtggaggcctactgatgttc
agtggctctggagacatttcaggatctggtattctcagtggctcagcctctggaagtggc
tctgggttcttgtcaagtgtgacctttgtggaatcagggttcactgacatgacagtgtca
tcctctggagagcaggaggcctctggggttttactccacagctctggacagaagagtggt
ggacatttgttttctggatttggaagctcaggtttcctctctgggtctgaatcgggaatg
tctggatcgagaatatctgaatcaggaatgtctggatctgagtcctctacgagcggagaa
gaaggcagtgttacatttttgactggagatttttggacagaggtatccggagacgctacg
cggtctatggagcttggacaggggtcggtgcagtacagcggagaaggaagcagtagcagc
agtggcttccactctggcagcggagacacccacttgtccacagccagtggcactttttca
ggggctttctctggtgatttgacacatgtggcggtgctgccctctctatccagtgagtgg
ggactgacagagagcaccacaggaccagaagaggccctcagtggggctgaactgtcacag
atccccagtggcatctatggaactccccaccctgtgcttgcccccgcaggactggctgct
cctcccaccgcaaccacaccaacctctgtgcaggcaccaggcgatggtaaagaaacagat
tcattggagggtggttttaacccatgtgaacccaacccatgtggcgctgcttcatgcacc
gtagaggatggggttgttctctgccatgaggtagatgtgtgccatcccaacccttgtgcc
aatggagccacctgtgtggagagcgcagactcttacaaatgcttatgcctgcccagctac
ggaggggaacgctgtgagatcgatgagcagcagtgtgaagacggttggactaagtttcag
gggaactgctacctacacttctctgacagagaagagtggctggaggcagagcagcgctgc
cgggacttgaacgcccacctggtcagcatcatcaccccagaggagcaagactttgtcaac
tcaaacacacaggactaccagtggatcgggctgaatgacaagacagtcaagaatgacttc
cgctggacagatggcactccactgcaattcgagaactggaggccgaaccagccagataat
tacttcaactctggagaagactgtgtggtgatgatctggcatgagaacggccagtggaac
gacgtgccctgcaactaccacctgccgtttacctgcaagaaaggcccagcgtcctgtggc
tccccgccggaggttgacaatgcccacatgtttggtaacaggagggaggaataccctgtc
aacgccatcatccgatatcagtgcaacccaggctttacacagcgccaccctcccgtggtt
cgctgtaaagcagacggacagtgggagaaaccccaagtggaatgtactgacgtgaaagcc
agaagaaggatacagcggaggagcagcaggagtctggcagccagcggcaaacttcactaa
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integrated database retrieval system
