Etheostoma spectabile (orangethroat darter): 116686839
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Entry
116686839 CDS
T08457
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
esp03016
]
116686839 (rtcb)
Enzymes [BR:
esp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116686839 (rtcb)
Transfer RNA biogenesis [BR:
esp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116686839 (rtcb)
Prokaryotic type
tRNA splicing ligases
116686839 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
116686839
NCBI-ProteinID:
XP_032367769
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MTLGRWRSCKTQHLNSFKFKSSLVRTMSRSYNDELQYLEKMGKNSWRIKKGFVPNMQVEG
IFYVNEPLEKLMFEELRQACGGRGGVGGFLPAMKQIGNVAALPGIVHSPSVSQTFTLVGF
AIGNMAAFDMSNPDAVVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVG
VGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKR
GLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDAL
VAMEKAMKRDRIVVNDRQLACARIMSPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSK
VFATTPDDLDMHVIYDVSHNIAKVEEHMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQL
TGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRAMSRAKSRRNLDFQDVLDKLAD
QGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISRKAIKLRPIAVIKG
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgacacttggtcgctggagaagttgtaaaacgcagcatttaaactcttttaaatttaaa
tcttctctggtcagaacaatgagtcggagttacaacgatgagctgcagtacctggagaag
atgggcaagaactcgtggaggattaaaaaaggttttgttcccaacatgcaggtggagggc
atcttctacgtcaacgagcctctggagaagctgatgtttgaggagctccgccaggcgtgt
ggaggcagaggtggtgtcgggggattccttccagccatgaaacaaatcggcaacgtggcg
gcactgccggggatcgtacacagtccatcggtctcccagacgttcactctggtcggattt
gcgatcggaaacatggccgccttcgacatgagcaaccccgacgccgtggtgtctccaggc
ggcgtcgggttcgacattaactgcggcgtccgtctgctgaggacgaacctggacgagggg
gacgtccagccggtgaaggagcagctggcccaggcgctgttcgaccacatccccgtgggg
gtcgggtccaagggagtcatccccatgggggccaaggacctggaggaggctctggagatg
ggagtggactggtccctgagggagggctacgcctgggccgaggacaaggagcactgcgag
gagtacggccgcatgctgcaggccgaccccaacaaggtgtcctccaaggccaagaagaga
ggcctgccgcagctggggactctgggagcaggaaaccactacgctgagatccaggtggtg
gacgagatctacaacgactacgccgccaagaagatgggcatcgaccacaaaggccaggtg
tgtgtgatgatccacagcggcagccgggggctcgggcaccaggtcgccacagacgctctg
gttgccatggagaaggccatgaagagagaccggatcgtggtgaacgaccggcagctggcg
tgcgcccgcatcatgtccccggagggccaggactacctgaagggcatggcggcggccggc
aactacgcctgggtcaaccgctcgtccatgaccttcctcacccgccaggccttctctaag
gtgttcgccacgacgccggacgacctggacatgcacgtcatctacgatgtttcgcacaac
atcgccaaagtcgaggagcacatggtggacgggaagcagaagacgctgctgctccaccgc
aaaggctccacccgagccttccccccccaccaccccctcatccccgtagactaccagctc
acgggtcagccggtgttgatcggagggacgatgggaacctgcagctacgtcctcaccggg
acggaacaaggcatgacggagacattcggcaccacctgtcacggagcgggccgcgcgatg
tcccgggccaagtcccgcaggaacctggacttccaggacgtcctggacaagctggcggac
cagggcatcgccatccgggtggcgtcgcccaaactggtcatggaggaggctcccgagtcg
tacaagaacgtaacggacgtggtgaacacgtgtcacgacgccggtatcagcaggaaggcg
atcaagctgcggccgatcgccgtgatcaaaggctga
DBGET
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