Etheostoma spectabile (orangethroat darter): 116686970
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Entry
116686970 CDS
T08457
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03022
Basal transcription factors
esp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116686970 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
116686970 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116686970 (ercc2)
03036 Chromosome and associated proteins [BR:
esp03036
]
116686970 (ercc2)
03400 DNA repair and recombination proteins [BR:
esp03400
]
116686970 (ercc2)
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116686970 (ercc2)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116686970 (ercc2)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
116686970 (ercc2)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116686970 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116686970
NCBI-ProteinID:
XP_032367946
LinkDB
All DBs
Position
3:1300398..1313695
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KTFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKQTGESNNFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQRHSDPDMPVCRFYEEFDVVGRQVPLPAGVYNLDDL
KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCHTNVDTLQNTIQKIKETDAVKLKMEYRRLVEGLKEANVARE
TDVYLANPVLPDEILKEAVPGNIRTAEHFVGFLKRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLESEEMLQKIAKIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgagggtctgctggtgtatttcccgtatgactacatatatccggag
cagtactcctacatgctggagctgaagaggactctggatgccaagggccatggagtcctg
gagatgccttcaggaacagggaagaccatctctctgctgtctctcatcgttgcctaccag
aagacctttcctttggaagtgaccaagctaatatactgctccagaacagttcccgagatc
gagaaggttgtggaggagctgaggaagttgatggagttttattccaagcaaactggagag
agcaacaacttcctggctctggctctttcctccagaaaaaacctctgcatccacccggag
gtgagcgcgctgcgcttcgggaaggaggttgacgggaagtgccacagtctgacggcatcg
tacattcgcgcacaacgccacagcgaccccgacatgcctgtgtgtcgcttctatgaggag
tttgatgtagtcggacgacaggtgcctcttcctgctggcgtctacaacctcgacgacctg
aaggactttggcaggaggaaaggctggtgtccttattatctggcccgctactctatcttg
catgccaacattgttgtgtacagctaccactacctgctggaccccaagatagctgacctg
gtgtccaaagagctggccaagaagtctgtagtggtgtttgacgaggctcataatatagac
aatgtgtgcatcgactccatgagtgtgaacatcaccaggcgaacacttgaccgctgccat
accaacgtggacactcttcagaacacaatacaaaagataaaggagacggacgctgttaaa
ctgaagatggagtacaggcgattggtggagggattgaaggaagctaatgttgccagggaa
acggacgtctaccttgcaaatccagtgttacctgatgaaattctgaaagaggcggtcccc
ggcaatattcgcacagcagagcactttgtgggtttcttgaaacgtttcctggagtatctg
aagtcccgtctgagggtccaacatgttgtacaggagagcgccccgcagttcctcaaagac
atcttcgacaaagtctgcatcgaccgcaagcctctcaggttttgtgcagagcggttacag
tcgctactacggactctggagattgctgacatcgccgatttctcagccgttactctcatc
tccaactttgccaccctggtcagcacctacagccaaggtttcacaataatcattgaaccc
tttgaagacagaactccaaccattgccaaccctgtgctgcacttcagctgtatggacccg
tctattgccatcaaacctgtttttcagagatttcagtcggtcatcatcacctcggggact
ctctctccgctggacatctatccccgaatcctcgacttccgtcctgttaccatggcatcc
ttcaccatgacgctggcacggacctgcctctgtcctctgattgttggcaggggaaatgat
caggtggccctgagctccaagtttgagaccagagaagactttgctgtgattcgtaattat
ggaaacttacttctagagatgtctgcgatcgttcccgatggcattgtggcattcttcacc
agctacgtctacatggagaatatagtggcgtcttggtatgaacagggtatcctggagaat
atccagagaaacaagctgatcttcattgagactccggatgctgcagagacgagcatggcc
ctggagaaataccaggaggcatgtgagaacggcagaggagcaatcctcctgtctgtggcc
aggggaaaggtgtccgaaggaatagattttgtgcatcattttgggcgggccgtcatcatg
tttggagtgccttacgtttacacgcagagccgcatcctaaaggctcgtctggagtacctc
cgggatcagtttcagatcagagagaatgactttctgacgtttgacgccatgcgtcacgca
gcccagtgtgtgggcagagccatcagaggaaagactgactacggactcatgatcttcgct
gacaagcgttatgcccgagcagacaaacgtgggaagcttcctcgctggatacaggaacac
atcaatgacggcagcctgaacctcaccgtggacgaggctgtccagctgtccaagcacttc
ctgcggcaaatggctcagcctttcagacaggaggatcagctgggtctctctctgttgact
ctggagcagctggagtcagaagagatgttgcagaaaattgctaagattgctcatcagacc
taa
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