Etheostoma spectabile (orangethroat darter): 116687114
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Entry
116687114 CDS
T08457
Symbol
ncam1
Name
(RefSeq) neural cell adhesion molecule 1 isoform X1
KO
K06491
neural cell adhesion molecule
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
esp04514
Cell adhesion molecule (CAM) interaction
esp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
116687114 (ncam1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
116687114 (ncam1)
04517 IgSF CAM signaling
116687114 (ncam1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
esp04131
]
116687114 (ncam1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
esp04515
]
116687114 (ncam1)
04090 CD molecules [BR:
esp04090
]
116687114 (ncam1)
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116687114 (ncam1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
esp00537
]
116687114 (ncam1)
04091 Lectins [BR:
esp04091
]
116687114 (ncam1)
Membrane trafficking [BR:
esp04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
116687114 (ncam1)
Cell adhesion molecules [BR:
esp04515
]
Immunoglobulin superfamily
NCAM1/2
116687114 (ncam1)
CD molecules [BR:
esp04090
]
Proteins
116687114 (ncam1)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
116687114 (ncam1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
esp00537
]
Others
116687114 (ncam1)
Lectins [BR:
esp04091
]
I-type lectins (Siglecs)
116687114 (ncam1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Ig_VEGFR-1-like_5th
FN3_DSCAM-DSCAML_C
V-set
VEGFR1-3_N_Ig-like
V-set_CD47
Pur_ac_phosph_N
C2-set_2
Ig_PDGFR_d4
Fn3_ROS1
C1-set
C2-set_3
Fn3_VIN3
Motif
Other DBs
NCBI-GeneID:
116687114
NCBI-ProteinID:
XP_032368139
LinkDB
All DBs
Position
3:17836171..17923201
Genome browser
AA seq
1245 aa
AA seq
DB search
MVQLRDIFLALLLVGYTVSLEVEITPSHGEISLGESKFFMCEADAAARHIDWFGPSGDRI
EPNRPDITVTRNDDSSSTLTLYKAGTEHAGTYKCVASGGDQQAESTVKVKIFQKITFTNA
PSPQEFTEGDNANIVCDVISSPPPTVFWKYKGAKIQMEKDVRFKVLSNNHLQIRGIKKTD
EGSYTCEGRLMARGEIDLRVIKVVVNVLPTIRVWQSEVNATADVGQAAMLTCAVDGYPEP
MVTWTRNGVVLEAGEKYSFNDDGSEMTLMDVAKLDEGEYTCIAKNKAGESEQELSLRVFV
KPKITYIENQSTSEMEEQVTLTCEALGDPTPTISWSSGERVFTEGEQAHLNRIYQASWTR
PEQHKSLDGSVVVRSDARVSSLTLKYVKYTDAGQYLCSARSAIGEDAQPAYLEVRYAPKI
TGAVAVYTWEGNAVNISCEVKAHPSEVSIVWLRDGLQLPNSNATNIKIFRSPSASYLQIT
PESENDFGSYNCTASNEMGTESKEFLLIQAEVPSAPSVSEVRPFSTTAQIQFEEPESTGG
VSVLKYRAEWRTQGRGNWVHRVYEVQDGYTSEMTITGLKPETSYELKLSAINGKGEGESS
PAEFFKTEPVRHTYENGIYNFFTEDTEGNPNPPKLEGALQPKGNSVKVSWIKQDDGGSPI
LHYLIRYKPIQVSEWKPEIRLPSGSDYVVLSGLEWDTEYNVYVVAENQKGKSQPATMSFR
TSTEPEAIQDLGEEAAFSMGTMLWAGILVVVFVFLLLAVDVTCFFVNKCGLIMCLCGKSG
TGTKGHNLEEGKAAFMKDESKEPIVEVRTEDECTANHNAAGPTEPNETTPLTEPELAAYT
AALALDTLSSIATNSDTATATLDPAQDSPSSETTTLTCSLSTPANDPSPTPVLAPAPTPE
SNTAPPTPLIFTSAVEAKMAPLVEQRGSITPEEQEKITTPPSTPEWTKAKKSGTPIPPKR
RHSPKLAALNAKGSPPVSPLAASSSSSSPKPDTKKPAPRPPVNKLPIQPHVVDSDTETPA
QTATTLATTVPPKPDPDSKTPDPSGCSLTPFDTNSGPADKAVDDNTDKGGPTSSPSVIHS
APKVQEVEESAPLVAEVPSPLPVTPIPSYPAPATVEAPVSNDLLTSPSDTYNLQTCDVGP
NSVDFELELTNGTERPSWTPADLISLESPPSAPSLPNGDRGDLPPSGPVLEASETLAKTA
PPVNDEKTFSDEKGKLEEADLSNVLTEIAAEHNSVIQTKTTESKA
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggtccagttaagggatatttttctagccttgcttcttgtgggctatacagtttcactg
gaagtggagatcacaccgagtcacggggagattagtcttggagagtccaaattcttcatg
tgtgaagccgatgccgctgccaggcacatagactggtttggaccgagtggggacaggata
gaaccgaaccgaccagacataacagtaacccgtaacgatgattcatcttccaccctcaca
ctgtataaagctgggactgaacatgcagggacatacaagtgtgtcgctagcggtggagac
caacaagcggagtcaaccgtcaaagtgaaaatcttccaaaaaatcacctttacaaacgca
ccctcaccccaagagttcactgaaggagacaatgccaacattgtttgtgacgtcatcagt
tcgcctccaccgactgtcttctggaaatataaaggagcaaaaatacagatggaaaaagat
gttcgctttaaggtactgagcaacaatcaccttcaaatccgtggcataaagaagaccgat
gagggctcctatacctgcgagggtcgcctcatggcccgcggcgagattgatctgcgggtc
atcaaggtcgttgtgaacgtgctcccgaccatcagggtatggcagtccgaggtgaatgcc
acagcagatgttggccaggctgccatgttgacttgtgctgttgatggctatcctgaaccc
atggtgacatggacaaggaatggagtggtcctcgaggcaggagagaagtacagctttaat
gatgatggctccgaaatgacattaatggatgttgccaagctggatgaaggagagtacacc
tgcattgccaaaaacaaggccggggaaagtgagcaggaactcagtctgagagtgtttgtc
aaacctaagatcacgtacatcgaaaaccagagcacttcagagatggaggaacaggtaact
ctgacttgcgaggcattaggagatccaactcccaccatcagctggagttctggtgagcgc
gtcttcaccgaaggagagcaggcacatctaaacaggatctatcaggcatcatggactcgg
cccgagcaacacaagagtctggatggaagtgtagtggtgaggagtgatgctcgtgtgtcc
tctctcactctgaagtatgtcaagtatacagacgcgggtcagtacctctgctcagcacgc
agtgccattggagaggatgctcagccggcatatctggaggtccgctatgcccctaagatc
accggtgcagtggcagtgtacacctgggagggaaatgctgttaatatcagctgcgaggtc
aaggctcatcccagtgaggtatctattgtgtggctgagagatggactgcagctccccaac
tcaaacgccaccaacattaagatcttcagaagcccatcggccagctacctgcagataacc
cccgagtcagaaaatgacttcgggagctacaactgcaccgcttcaaatgagatgggtaca
gagtccaaggagttcctgctcattcaggccgaggtgccatcggctccatccgtcagtgag
gtgagacccttctccaccacggcacagatccagtttgaggagccagaatccaccgggggt
gttagtgttctcaaataccgagcggagtggaggactcagggcaggggcaactgggtgcac
cgggtctatgaagtccaagacggctacaccagcgagatgactatcacaggcctgaagcca
gagaccagctacgaactgaagttgtcagccatcaacggcaagggtgaaggagaaagcagc
cccgcggagttcttcaagacggagcctgttcgccatacttacgagaacggcatttataat
tttttcactgaagacacagaagggaatcccaatcctcctaaactcgaaggggcacttcaa
cccaaaggcaactccgtcaaagtcagctggatcaagcaggacgacggcggctcgcccatc
ttacattatcttatccgctataaaccaatacaggtgtcggagtggaaaccagaaatccga
ctgcccagcggcagtgactacgtggttctcagcgggttagagtgggacactgagtacaat
gtctatgtggtggcagagaatcagaagggcaagtcccagccagctaccatgtccttcagg
acctccacagagccagaggccatccaagatttgggtgaagaggccgcgttctccatgggc
accatgctctgggcagggatccttgtcgtagtatttgtattcctgctgctggctgtggat
gtcacctgtttctttgtcaacaaatgtggcctcatcatgtgcctctgcggtaaatcaggc
acagggaccaaagggcacaacttggaggagggcaaggcagccttcatgaaagatgagtcc
aaagagccaatagtggaagtcagaacagaggacgagtgcacagccaatcataacgcagca
ggaccaaccgaacccaatgaaaccacacctctcacagagccagagctggcggcttacact
gctgctctggcactggacaccctctcctccatagccaccaactctgacacagccactgca
acccttgaccccgctcaggacagcccctctagcgagaccactaccctcacttgtagcctg
tctaccccggccaacgacccctcacccactccggtcctggccccagccccgactccagag
tcaaacactgccccgccgactcccctcatcttcacctcagccgtcgaagctaaaatggcc
ccgttagtagaacaaagaggaagtatcaccccagaagaacaggagaaaataaccactcct
cctagtacccctgaatggactaaagctaaaaaatcggggacacccataccaccgaagcgt
agacactcacctaaacttgccgcgctgaatgctaaaggtagcccgcctgtatctccactg
gctgcgtcttcctcatcgtcctctcccaaacctgacaccaagaaacctgcccccaggccg
ccggtcaataagctccccatacagccacacgtagtagactcagacacagagacgccagca
caaacggccaccactctagcaaccactgtccctccaaaaccagaccctgattcaaagacc
ccagatcctagtgggtgtagccttactccctttgacactaatagtggacccgctgacaaa
gctgttgatgataacactgacaaaggtggtccaactagttctccttcagtgatccacagt
gctcctaaagtccaggaagttgaagaatctgctcctctagttgctgaagtcccctcgccg
ttacctgttactcctattccttcttaccctgcccccgccactgttgaggcgccggtttca
aatgatctcctcacatcgccgtcagacacgtacaacttgcaaacctgtgacgtggggccc
aatagtgtggatttcgagttagagttgactaacgggacagaaagaccctcctggaccccc
gctgaccttattagcttagagagcccgccctctgccccctctctgcccaatggagacaga
ggagacctccccccctcaggcccagttctggaggcgtcagagactctggccaagactgct
cctcctgtcaacgatgagaagactttttctgatgagaaaggcaaactggaggaggccgac
ttatcaaacgtcctgacggagatcgctgcagaacacaacagtgtcatacagacaaaaacc
accgagagcaaagcatga
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integrated database retrieval system
