Etheostoma spectabile (orangethroat darter): 116687629
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Entry
116687629 CDS
T08457
Symbol
helz2
Name
(RefSeq) helicase with zinc finger domain 2 isoform X1
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116687629 (helz2)
Enzymes [BR:
esp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
116687629 (helz2)
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116687629 (helz2)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116687629 (helz2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_30
AAA_19
ResIII
UvrD_C_2
UvrD-helicase
AAA_22
PhoH
UvrD_C
DEAD
nSTAND3
Viral_helicase1
SLFN-g3_helicase
AAA_16
AAA
AAA_7
AAA_24
Terminase_6N
Bac_DnaA
FolB
GARS_N
Motif
Other DBs
NCBI-GeneID:
116687629
NCBI-ProteinID:
XP_032369026
LinkDB
All DBs
Position
4:complement(34378282..34422102)
Genome browser
AA seq
2894 aa
AA seq
DB search
MSAYESRLAPLLSTHELKLVCTNCSVKEKEITYKLKSDRHHCARDLLLCRAKDGSKWRPV
SKRPTFPNPSQYKVCCFFVEGSGCTYHKNRCTFARSDEEAVVWNFGKLHRLDHVFLCKLI
VQSDGGSKPPDNSEPAGELLPTLDLKAVCELCSIKEKEITHTVQSVTHQCSRKLLLAKEK
ASDQWRPVSERPTYIGQNALYQVCWFFVEGSGCTQHGQKCTFARSYEEATVWNYLKDNNI
DKEELIRLVIESEPIQLTPESAAESILQQFSGEXXXXVCKDCFHDRPQKITAKRWNSTCS
ADAAHTWDPVLVYHLSENSRKHIYSQVRPLHQDCEFKYCSHVRQGKPCWHEAGHCRSAQS
EVEMAVWKAEHSGLSLRPHLLQLSRREQTEPRLVTMYCKVCLLALSSPESFYKHCSSLEH
AQLLFEDTVTKWRGRQPPHNNRSDFWLCERPQTCEYGNKCPKAHSVEELQEWLMRAAEEK
EIRHNIGAQGLMCYNERLLEEYKNSNNEVYIISEDVDDVSVSCDEDLTVECEQTNATLQW
NFEVETERQLVHVALLKQEPGASFTLGDLSTVPCIYSSGEHFLSKDMTYDITVSFTSMTP
GLYDQWLVLDFDMRPVLLKKLRVRLGQLPLKDIEQPIGNRGATLQSAERWHRGNRVFIPC
SSRTEEQEELLKEYKPPQINFLYKSSCNSQEPLNNDNYKERMHHFLYNEERAEDQIVSRL
NVCGEITTMDTLNSTRFGMIMAPQGELFCAVSIPCNLTPDTPEGLVLKRSIQSGLIAPLS
SEGRNSKVYEAIILKDTTSEHQMYLQLSKKCCSDLTLKSNKTYQMEVQFQLNRHSFCHMH
KAIDLLPDTKRVLPDLKNCGVPVNSIRYEKLNAQQQAAIDFITGNSNVQKHVAPLLIYGP
FGTGKTFTLATAARELCKQPHNKVLICTHTNSSADLYVRDHFHPFIDKKNDAIRPIRIKA
NKQGSAFLATDEITLKYCLLSEDGQNFLPPTKAALDRYKIIITTTTMARHFHDLKLPEGY
FTHILIDEASQMLECEALMAFGLAGPNTRVVLAGDHMQMGPKLFSVDDHHRSNHTLLNRL
FHYYQGQKCDAAQNSRIIFSENYRSTKEIVEFVSTHFYVGKNDVIKATGNIPAPENGHAL
QFHHVRGECLLDTVSMSWFNKEEVAKVVEAVKEVLEYWPLTWGTKDQSSICVLSEGCQVW
QIRTALKRRRLAEVHVENIANVQGKQFRAVIMTAVQTRDSLQTTHLPGLELFNDARVLNT
AMTRAQSLVVVVGDAAALCCFGKCSRVWKSYIDHCISNNSVAPRHFTKDFFEKDLMETAR
FQKSEHVDENNTPNDAILQELKDKYEQLETECSSDEIILKSRSSYNTSDVETELLELCKK
QPEIYMQGKLVRESYNRGYVIPSHNPARCISITGRANLGKGFTGDEVLLQAAKVVSITKE
AASSRELVCLLEDEDLSKPRQNFEDQFVRRTMMPINKSAPKIRILIIKKKRNFLPIWEQT
NGQWTIARHERIDERLKENNVFVVQVIGWRDNCHLPLGKVIDILPIGNSLANGLTILNEE
FKVAPNTLKSDEALSKDDDWIHRKDMTDMKDINTFTVDPKNAEDLDDAISVREIGDQYEL
GVHIADVASLVSPGGELDEFAKQRGTTYYCSKENPVHMFPQDLSTGHFSLLPGKDRKVVS
LIIKVNKETHEILEKPKFQLSLIRSKEQLSYEAAEVMITKRYRERPTFHTVEDCVTVAYC
FAIAQRKIRLGVDWAYSQPDDQRLPGKRKAHLMIEELSVLFNTLASKRLIDSEKTKYCTP
LRCQKKPDLEKIEEFKEKCGDMIPLSFHVRHKVDHEEQAQKSQNFRILTEVWEDIQSAAR
TDDIDKMVDLIAADDIYPLLQPVINQFRRCSSKSKVLCSNSCREAQVGHYSLNVRSYTQA
SSPIRRYMDIILQRLLHSVICNREVQYTVDVIKTLCGQFEENLNNAKKYEQKAEQISYAV
SMRKESAAKLAFVVNPSRDSFAVAFPFNKNMFAGSLSIMYKDLQLCDQPTYDEANDCITL
KWKRRIYAVDNMQIHQELNIPDCGPCIELPLTMWKATVKAIDEKNWAHVKFLTMQLKNQN
IIPQSSKVPQSKTNLCTLKEHETQMEHEVDIELQLQRGDTLQIQMTTELKRGYHTPAVQL
VRIKPKFEICVHHVHSPITCFSRSADDPSRIYYSDIEEYVRIWKPLCEMESASTAVDESH
SIVIENLVVSFSQEQEGILTGSFFLPLSWINEWAIECNLSKCFLCIRKRGRTVTPNLELS
APMDPKEFTWVAHGVTRKVDQKKKPGNEGSKVEFYVNHLPMETFPECVFQKNICYTVEII
PKLVPDIRKENAVISITTACDLVMTIALGKQILKEVCNEPQPMRHILRKELPNVLPAFNE
SQYRAVEKALNNTFTLIQGPPGTGKTVVGVYIVYRFFELNSKNPRIVDHPMDADKKQVIL
YCGPSNKSVDVVAEYLLRFRERLNPLRVYSQQVEMLDYPYPDCTLQFSQRSLRQERAKSE
LRSITMHHRMRQDHNPSSREIKDFDRRIKLALEKEGEDLTAEEVKEYKNLLKAARTYELE
RHDIILCTCTQSSNPSLTRTVSARQILIDECGMATEPQALIPLVCNKPEKVVLIGDHKQL
RPIVKNERVRKLGMAKSLFERYYTMHKSRAVMLDTQYRMHEDICKFPSEEYYEGKLQTGV
DQPSSVLRVDSKTMPIVFGDIKGETISLVVNTAKGNENSKANQKERDKVIDIAEKLVKTA
KIKEQDIVILSPYNAQVSEIRDELKKKGMTQISVTTITKSQGSEWRYVIISTVCSLPSEE
INREPEGSWLSKHIGFVGDPNQINVGITRAKEGLCIIGNQELLSCSSSWKNLLAHYKRND
AVTIADNISVCCPT
NT seq
8685 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcttatgaatccagacttgctcctcttttatcaacacatgagctcaaacttgta
tgcaccaattgctctgtcaaggagaaagaaattacatataagttaaaatcagaccgccac
cattgcgcacgcgatctcctgctctgcagagctaaagatggcagcaaatggaggcctgtt
tctaagcggcccacgtttccaaatcccagtcagtataaagtatgttgcttctttgtggag
ggctctggttgcacataccacaagaaccggtgcacctttgccagaagtgatgaagaagct
gtcgtttggaactttggaaagcttcacagattagaccatgtgtttctctgtaaacttata
gttcagtctgatggaggatctaagccgcctgataattctgaacctgcgggtgaactcttg
ccaactctagatttgaaggctgtgtgtgagctttgttccatcaaggagaaggaaataaca
cacacagttcagtcagttacccaccagtgcagtagaaaactgcttttagccaaagaaaaa
gcctctgaccaatggaggcctgtctctgaacggcctacatacattggtcaaaatgctctt
taccaagtgtgttggttctttgttgagggctctggatgtacacaacacggacagaaatgc
acgtttgccagaagctatgaagaggccactgtatggaactatcttaaagacaacaacatt
gataaagaggagttaatccgacttgtaattgagtctgagcctattcaattaacaccagaa
agcgcagctgaaagcatactccaacaattttcaggtgaattnnnnnnnnnngtctgcaaa
gactgctttcatgatcgtccacaaaaaataacagccaaaaggtggaattccacttgctca
gcagatgcagcacacacctgggacccggtcttagtttatcacctatcagagaatagtagg
aagcacatttacagccaggtgcgcccgcttcaccaggactgtgagtttaagtactgcagt
catgtcaggcaaggcaagccctgctggcatgaggccggccactgccggtctgcccagagc
gaggtggagatggctgtgtggaaagccgaacacagtgggctctctcttcggcctcatctc
cttcagttgagccggcgggagcagacggagcccagactggtcaccatgtactgcaaagtt
tgcctcctggccctttcctccccagagagcttctacaagcactgctcctctttggagcat
gcccagttactctttgaggataccgtcaccaaatggagaggacgacagcctccacacaac
aaccgatctgacttttggctgtgtgaaagaccacaaacatgcgagtatggcaacaagtgt
ccaaaagctcattctgtggaggaactgcaggagtggttgatgcgcgctgcagaggagaag
gagatcagacataacattggagcccagggactcatgtgctacaatgaaaggctcttggag
gagtacaaaaacagcaataatgaagtatacattatttcagaagacgttgacgatgtcagc
gtctcctgtgatgaagatttaactgtggagtgtgaacagaccaatgcaacactgcagtgg
aacttcgaagtggaaacagagagacagcttgtgcacgtggcgctgctaaagcaggaacca
ggagcttcgttcactcttggtgacctaagtaccgtgccctgcatctactcctcaggtgaa
cactttctcagtaaagacatgacctacgacatcactgtgtctttcacatccatgacccca
ggcctgtacgaccagtggttagtgctagattttgacatgagaccagtgctactgaagaaa
ctcagagtaagactaggccagctgccattaaaggacattgaacaaccaattgggaaccgt
ggagccaccttacaaagtgctgagcgttggcatcgagggaacagggtttttatcccttgt
tcgtccaggacagaagaacaggaggagctgttaaaggagtacaagcctcctcagattaac
tttctgtataagtcctcctgcaacagccaagaacctctgaataatgacaactacaaagaa
agaatgcatcacttcctgtacaacgaggaacgggcggaggaccagattgtttcaagactg
aatgtttgtggagaaattacaacaatggatacgttgaacagcacaaggtttggcatgatt
atggctcctcagggagaactcttctgcgctgtctcaattccttgtaatctcacaccagac
acccctgagggactggttcttaaacgaagcatccagtctggcctgatagcacctttatct
tcagaaggtcgaaactccaaggtctatgaggccatcattttgaaggacaccacaagtgag
caccaaatgtatttgcaactgtctaaaaaatgttgctctgatcttacactcaaaagcaat
aaaacgtaccaaatggaagtccagtttcagctgaatcgccacagcttctgccacatgcac
aaggccatagacctccttcctgatacaaaaagagtgctaccagaccttaaaaactgtgga
gttcctgtgaatagcattcgttatgagaagctgaatgcacagcagcaggcagcaattgac
tttatcaccggtaattctaatgtccaaaaacacgtggcaccactcctaatctatggacca
tttggaactggcaaaaccttcacccttgccacagcagccagagagctttgtaagcagcct
cacaacaaagtgctcatttgcacccacaccaacagttctgcagatttgtacgtcagagat
cacttccatccattcatcgacaagaaaaatgatgcaataaggccaattcgaataaaagca
aacaaacaagggagtgctttcttggccacagatgagataactttaaaatactgtttgctt
tcagaagatggacagaattttttaccacccacaaaagctgcccttgatcgctacaaaata
atcataaccaccacaacaatggcaagacatttccatgacctaaagctcccagagggatac
ttcacccacatacttattgatgaagcctctcagatgctagaatgtgaggctttgatggcc
tttggtcttgctgggccaaacaccagagttgttttggctggggatcacatgcaaatggga
cccaagcttttctcagttgacgatcatcaccgttcaaatcacacactccttaatcgcttg
ttccactattatcaaggccaaaagtgtgatgctgcccagaatagtagaatcattttcagt
gaaaactaccgatcaaccaaagaaattgtggagtttgtctccacccatttctacgttggt
aagaatgatgttatcaaagccactggaaatattccggctcctgaaaatggccatgcccta
cagtttcaccatgtgaggggagagtgtcttttggacactgtatcaatgtcttggtttaac
aaagaagaggttgccaaagtggttgaagcagtgaaagaggttctcgagtactggccattg
acctgggggaccaaggaccaaagttcaatctgcgttctatcagaaggatgtcaggtttgg
caaattaggacagcacttaaaagaagacgccttgctgaagtccatgttgagaatattgca
aatgtgcaaggcaaacagttcagagcagtcataatgactgctgtgcaaacacgtgacagc
ctacaaacaactcacctgcctggtttggagctgttcaatgatgcccgtgtgttaaacact
gcaatgactagggctcagtcccttgtggttgtggttggagatgctgctgccctctgttgc
tttggaaaatgctcaagagtctggaagagctacatagatcattgcatcagcaacaacagt
gttgcaccacggcattttaccaaagatttctttgaaaaagatcttatggaaactgcaaga
tttcagaagtctgaacatgtggatgaaaacaacactcccaacgatgcaattctccaagag
ttgaaagataaatatgaacagttggaaacagaatgtagttcagatgaaatcatattaaag
tcaagatcatcatacaataccagtgatgttgaaacagaacttttggagttgtgtaaaaaa
caaccagagatatatatgcaaggaaagttagtcagggagtcatataacagaggttatgtc
ataccatctcacaaccctgctagatgtatcagtatcacaggaagggcgaacctgggtaag
ggcttcactggagacgaagtgttgttgcaggcagcaaaggtggtcagcattaccaaggaa
gctgcatcatcccgtgaacttgtgtgcctgcttgaagatgaggatctcagtaaaccaaga
cagaattttgaagaccaatttgtcagaaggacgatgatgcccattaataaatctgcaccc
aaaatacgcatactgattatcaagaaaaaacggaacttccttccaatatgggagcaaact
aatggacagtggacgattgcacgacatgagcgtattgatgaaaggttaaaagaaaacaat
gtatttgtagtgcaagtgattggctggagagacaattgtcatcttccattgggaaaagtc
atagatattcttccaattggaaattctttggctaatggactaacgatcctgaatgaagaa
ttcaaagttgcacccaatacattaaaatcagatgaggctctatccaaagatgatgattgg
atacacagaaaggacatgacagacatgaaagacataaacacgttcactgttgatccaaaa
aacgcagaagacttggatgacgcaatcagtgtaagggaaattggagatcagtatgagttg
ggagtccatattgcagatgtggcaagcttagtgagtccaggtggtgaattagatgagttt
gcaaaacaacgtggtactacatattactgtagtaaagaaaaccctgtgcatatgttccca
caagacttgagcactggacacttcagtcttctgccaggcaaagatcgcaaggtggtttca
ttaataatcaaagtaaacaaggaaacacatgagatccttgaaaagcccaaattccagctg
tcattgatcaggtctaaagaacagttgtcttatgaggcggcagaggtcatgatcaccaaa
agatatagagagagacctacatttcacaccgtagaagactgtgtcacagtggcttattgt
tttgcaatagctcaaaggaagattcgacttggagtggattgggcttattctcaacctgat
gatcagagattgcccggaaagcgcaaagcccatctgatgattgaagagctgagtgtgtta
ttcaacacacttgcatctaagaggttgattgattctgagaaaaccaagtattgtacaccc
ctacgctgtcagaaaaaacccgatctagaaaagatagaagaattcaaggagaaatgcgga
gatatgattccactgtcttttcatgtacggcacaaagttgaccatgaggaacaagcccaa
aaaagtcaaaactttcgcatactcacggaagtgtgggaagatatccagtcagctgccaga
acagatgatattgacaaaatggtggaccttattgctgcagatgacatctaccctttgctc
cagccagtcattaatcagttcagaaggtgctctagtaaatctaaagtcctgtgttcgaac
tcctgtcgcgaagcacaagttggtcattattctctgaatgtaagatcgtacacacaagca
tcctcgccaatacggcggtacatggacatcatcttgcaaagacttttgcactccgtcata
tgtaacagggaggtccaatacactgtagacgtgataaagactttgtgcggtcaatttgag
gaaaacctcaacaatgccaagaagtatgaacaaaaggctgagcagatctcctatgcagtg
agcatgagaaaagaaagtgctgcaaagctagcctttgttgttaatcccagcagagacagt
tttgcagtggcatttccttttaacaagaacatgtttgcagggagtttatcaattatgtac
aaagatttacaattgtgcgaccaaccaacttatgatgaagcaaatgactgcatcactctt
aaatggaaaaggcgaatctatgcagttgacaacatgcaaatccaccaagagttgaacatt
ccagactgtggtccctgcattgagcttccactaacgatgtggaaagccactgttaaagca
attgatgaaaaaaactgggctcatgtcaagtttcttacaatgcaactgaaaaatcaaaat
attataccacagtcatctaaggtgcctcaatcgaagactaacttatgtaccttaaaggag
catgagacacaaatggagcatgaggttgacattgagctccagttgcagagaggtgacacc
cttcagatccaaatgacaactgagttaaaaagaggttaccacacacctgctgtgcagttg
gtgcgcattaaaccaaagtttgagatttgtgtgcatcatgtccacagccctattacatgc
ttctccagatctgcagatgatccatcaaggatttattacagcgacattgaggagtatgta
cgcatatggaaaccattgtgtgagatggaatctgcttccactgctgtggatgaaagtcac
agcatagtcatcgagaacttggtagtaagcttcagtcaagaacaagaaggcatactaaca
ggaagcttcttcttacctctatcatggattaatgaatgggccattgaatgtaacctttca
aagtgctttctgtgcatacgtaaaagaggtcggacggtgactccaaacctggagctttct
gcaccgatggacccaaaagagttcacttgggtggcccatggtgtcacaagaaaagtagat
caaaagaaaaaaccgggaaatgaaggaagtaaagtggagttctatgtcaatcacctgccg
atggagacctttcctgaatgtgtctttcagaaaaacatttgttacacagttgaaataatt
ccaaagctcgtgcctgacatccggaaagaaaacgctgtgatcagcattacaactgcatgc
gatcttgtcatgactatagcacttggaaaacagattctaaaagaggtgtgtaatgagccc
caaccaatgaggcacatcctgaggaaagagctaccaaatgtattgccagcctttaacgag
agtcagtatcgtgctgtggagaaagctctaaataatacctttacacttatacagggacct
cctggaactggaaagacagtagtaggtgtgtacatagtgtaccgtttctttgagctgaac
tctaagaacccaaggatagttgatcacccaatggatgccgacaagaaacaagtcattctc
tactgcggcccatccaacaagtctgttgatgttgttgcagaatacctgttgaggtttagg
gaaagactaaatcccctcagggtctacagccaacaagtggagatgcttgattacccttat
ccagactgcacgcttcaattttcccagaggtcacttcgccaagaacgtgccaaatcagag
ctaaggagcatcactatgcatcaccgcatgcgacaggaccacaacccttcttcaagagaa
attaaagattttgatcgacgcattaaacttgcccttgagaaagaaggagaagatctgact
gctgaagaggtgaaagaatacaaaaaccttctcaaagctgcgcggacatatgagcttgaa
cgccatgacatcatactgtgcacatgtacacagtcttccaacccgagtttgactaggaca
gtcagtgcacgtcagatcctcattgatgaatgtggaatggccactgaaccccaagccctg
attccattagtctgcaacaaaccagaaaaggttgttttgattggtgaccacaaacagtta
cgacccattgtgaagaatgagcgtgtgaggaagctggggatggccaagtctctgtttgaa
cgctactatacaatgcacaagagcagggcagtgatgctggacacccagtacagaatgcat
gaggacatatgcaagttcccgtcagaagaatattatgagggaaagctgcaaactggggtg
gatcagccaagcagcgtcctgcgtgttgattccaagacgatgccaattgtttttggggac
atcaaaggagagaccatcagtctggttgtcaacacagccaagggcaacgagaactccaaa
gcaaaccagaaagagagagacaaagtgattgacattgctgaaaagctggtgaagactgcc
aaaatcaaagagcaagatattgtgattctgtcaccctataatgcacaagtgtctgaaatc
agagatgagctgaagaagaagggaatgactcaaatcagcgttaccacaatcaccaaaagc
caaggaagtgaatggcgttatgtcatcatatctacggtgtgctctctgccaagtgaagag
attaatagagaaccagaaggatcttggctgtccaaacatattggctttgtaggtgatccc
aaccagataaatgtgggcatcaccagagccaaagagggactttgcattatcggaaaccaa
gagttgctgagctgcagtagctcttggaaaaatctcctggcccactacaagcgtaatgat
gcagtgacaattgcagacaacatttcagtgtgctgtcccacatag
DBGET
integrated database retrieval system
