Etheostoma spectabile (orangethroat darter): 116687843
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Entry
116687843 CDS
T08457
Symbol
chl1
Name
(RefSeq) neural cell adhesion molecule L1-like protein isoform X1
KO
K06758
L1 cell adhesion molecule like protein
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
esp04515
]
116687843 (chl1)
Cell adhesion molecules [BR:
esp04515
]
Immunoglobulin superfamily
L1 family
116687843 (chl1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
Ig_2
ig
Bravo_FIGEY
V-set
Ig_5
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_4
Fn3_VIN3
C2-set_3
Ig_6
Ig_PDGFR_d4
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
116687843
NCBI-ProteinID:
XP_032369382
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Position
4:28708166..28773972
Genome browser
AA seq
1303 aa
AA seq
DB search
MRLQRSPELATVLGLITCICVFHTTTAIDIPLEVLGHINIEQLPTITAQSPSSLIAFPFD
ESFPMMCEAKGNPEPEFRWTKNGQEFDPSLDPRLMKEESSGTFVIPNNGNLTEYQGIYRC
YASNKLGTAISKEIEFIVPHVPKFPKETLDPVVVEEGQPFTLKCNPPKGIPPLQIYWMTI
NLQHIEQDERVSMGLNGDLYFSHAVDKDSRRDYCCFAAFPRIRTIVQKTAMSVIVKTKKS
DMSPESANAILERKPSLLTPSTARSETQLVKGEDLKLECIAEGFPTPQVEWVKMGHQLPI
KAKVENHGKLLIVPRVEQEDSGKYMCKAKNGLGEAVHYFTLKVEEPPEWVIEPESQLSMI
GSDVHIKCSASGTPQPTITWRVNGELLQGAPAANRKVFDDTIVLHNAKASDSAVYQCEAS
NKHGTLLSNANIMIMNLSPMILTKEGEDYTAVEGKGVIMHCNVFSSPPSTITWSKDDSSE
SVEGPRHAIHDNGSLEIYSVEKEDTGQYTCLAKNTEGSSAIDAMLYVKDPTRIVVAQEDL
QILIGTTARLSCLAEYDKSFSNDFELLWEKDDMKIALNNTENSRYFVEEGILQIINVSHR
DQGVYTCVAQTPVDRDTASALLMVLDVPDAPENLVLSEHKSKSVKLKWIPGDDHNSSTTE
FIIEYEESQWEPANWKELLRVPGNHNSAVLKLHGHVDYCFRVSGLNAVGRGLPSKPTERY
KTPPAAPDKNPENIKIEGHLPHEMDINWEPLLPIEHNGPGLEYKVSYRRQDVEEDWKEHM
VKRHSFVVKKTPTFVPYEIKIQARNHQGWGPEPKIVTGYSGEDSFFWTCPQEVSSVPSAA
PDDVAVEVMNSSVVKVSWTRVHKDKLHGHLGGYRINWWRLRSLAASKKSHGEKHTLKFPG
DQSHAMVPGLKPFSEYSLIVMTFNGRGNGPGSPPLSFKTPEGVPEKNPVFRVTDVQKHTV
SLVWAPPLEPNGILTGYLLEYQLINDTEEVGPLQTVDISNPNTTKWNLRDLEPVSKYKFY
LRSCTTVGCGPVVSEECTTTLETTSTLTSTLGLSKSASPSPPSTPKSPVTKPTRSTIVPG
LLNFSSAVSDSFANISWISGGEHTEFFIAYMNNREGLWKISEALNTSKTFHIIDGLDPGT
EYTVRLIPNSWVDNSSIFEDVITTAFTGLASIHGGISTKGWFIGLMCAIALLTLIVLIAC
FVNRNKGGKYSVKEKEDLHPDVESQGMNDDTFCEYSDSDEKPLKGSQRSLSREIKAGDSG
DSLVDYGDEDVQFNEDGSFIGEYAGRKEKRVSAEIKATIQTPA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcagaggagcccagaattggccaccgtgctgggcttgatcacctgtatttgt
gtctttcatacgactacagccattgacatcccactggaagttttaggtcatataaacatt
gagcagctgcccaccatcacagctcagtcgcccagctctctcatcgccttcccttttgat
gagagcttccccatgatgtgtgaagccaaaggaaatcccgagccagaattcagatggacg
aagaatggccaggaatttgacccctctctagacccccggctgatgaaagaggagagttct
gggacctttgtgattcccaataatgggaaccttacagagtaccagggaatctatcgctgt
tacgcctccaacaaactggggaccgccatatcgaaggagattgagttcattgtgccccat
gttccaaagtttcctaaagaaacacttgatcctgttgtggtggaggaaggtcagcctttt
actttaaaatgtaatccacctaaaggaataccacccctccagatctactggatgactatc
aatcttcagcacatagaacaggatgagagggtgtctatgggcttgaacggagacctttac
ttctctcacgcggtggacaaggacagcaggagagactactgctgctttgccgccttccca
agaatacgaaccatcgttcagaagaccgccatgtctgtcatcgtcaagacaaaaaaaagt
gacatgagtcctgaaagtgctaatgcaatccttgaaagaaaaccctctcttctgacgccc
tctactgccagatcagagacacagctggttaaaggagaggacttgaaattggagtgtatt
gctgaaggatttccaactccacaggttgagtgggtgaagatgggtcatcaacttcccatt
aaagcaaaagtggagaatcatgggaaattgttgattgtgccaagagttgaacaggaagac
agtgggaagtacatgtgcaaggcaaagaacggacttggagaagctgtccattacttcacc
ctgaaagtagaagagcctcctgagtgggtgattgagccggagagtcagctaagtatgatc
ggctcagacgttcacatcaagtgttctgccagtgggactcctcagccgactataacatgg
agagtgaacggtgaacttctgcagggggcccctgcagcaaacaggaaggtgtttgatgac
accatagttttacataacgccaaagcatctgacagtgcggtctatcagtgtgaggcctcc
aacaaacatggaacccttctgtcaaatgcaaacatcatgatcatgaatctatcccccatg
attttgaccaaggagggggaggattataccgctgttgaggggaagggagtgattatgcac
tgcaacgtcttcagctctcctccctctactatcacttggagcaaagacgactcctctgaa
tccgtggaggggccgaggcatgccattcacgataatgggtcgctggagatctacagcgtg
gagaaagaagacacaggacagtacacatgtttagctaaaaacacagagggatcgtctgcc
attgacgctatgctctatgtgaaagatcccactagaatagtcgtggcccaggaggacctg
cagatcctaataggcaccacggcccggctctcatgcctcgcagagtacgacaagtccttt
agcaatgactttgagctcctttgggaaaaagatgacatgaagatagccctcaacaacact
gagaattcaagatactttgtggaggagggtattcttcaaattatcaatgtaagccacagg
gaccagggtgtgtacacatgtgtggcacaaactccagtggaccgagacacagcctcagca
ctgctcatggtgttagatgtccctgatgcacccgagaacttggtactgtctgaacacaag
agcaaaagtgtgaaactgaaatggatccctggggacgatcacaacagctccaccacagag
tttattattgaatacgaggaaagccagtgggagccggcaaactggaaggagctgctccga
gtacctgggaaccacaactcagccgtgcttaaactccacggccacgtcgactattgcttc
cgcgtgtctggtttaaacgctgtagggaggggtcttcccagcaagcccacagaaagatac
aaaacccccccagcagctcctgacaagaaccctgaaaatatcaaaatcgaaggtcattta
ccacatgaaatggatatcaactgggagcccttgttacccattgagcacaatggtcccggt
ttggagtataaggtgagttacaggagacaggacgtggaggaggactggaaggaacacatg
gtgaagagacactcgtttgtggtgaagaaaactcccacctttgtgccctatgagatcaag
atccaagccagaaaccatcagggctggggccccgagcccaagatagtgaccggctactca
ggagaggactctttcttctggacttgcccccaggaagtatcctcagttccctctgctgca
cctgatgatgtagctgtggaggtgatgaacagctcagtggtcaaggttagctggacgcgt
gtacacaaggacaagttacatggacatctgggaggctacaggataaactggtggcgtctg
cgcagtctggcggcctcaaaaaaaagccacggagaaaaacacacgctaaaattccccggg
gaccagtcccacgccatggttccaggactaaaacccttctctgagtacagcctcatcgtc
atgaccttcaacgggcggggcaacggccctggcagccctcccctcagcttcaaaaccccg
gagggagtccctgagaaaaatcctgttttcagggtcacagatgtacagaaacacactgtc
tctctggtctgggccccgccattggagcctaatgggattctcaccgggtacctcctcgag
tatcagctcatcaacgacacagaagaagtggggccactgcagacagtagacatcagcaac
cccaacaccaccaagtggaacctgcgtgacttggagcctgtgagcaaatacaaattttac
ctgcgctcctgcaccacggtgggctgcgggcccgttgtcagcgaggagtgcaccactact
ctagaaacaacttccactttgacttccacccttggcctcagcaagtcagcttccccctca
cctccaagcactccaaagtccccagtgaccaaacccactcgttccaccatagtcccgggc
ctgttgaattttagctcagctgttagtgacagctttgcgaatatcagctggatatctggt
ggagagcacacagagttttttattgcatatatgaacaaccgtgagggtctctggaagata
tcagaggccttaaacacctctaagactttccacatcattgatgggctcgaccccgggaca
gagtacactgtgcgccttattcctaacagctgggttgataattctagcatatttgaagat
gttatcacgaccgcgtttacaggtctggccagcatccacggaggaatatccaccaagggc
tggtttatcggcctgatgtgtgccatcgctctcctcacactcattgtgttgatcgcctgc
tttgtcaacagaaacaaaggagggaagtattccgttaaagaaaaagaggaccttcaccca
gacgtggagtcccagggcatgaatgacgacacattttgtgaatacagtgacagcgacgag
aagccgctgaagggcagccagcgctcgctgagcagagagatcaaagccggggacagcggg
gacagcctggtggactacggggacgaggacgttcagttcaacgaggacgggtcctttatc
ggcgagtatgcggggcggaaggagaagagggtgtccgctgagatcaaagccactattcag
accccggcatga
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