Etheostoma spectabile (orangethroat darter): 116687916
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Entry
116687916 CDS
T08457
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
esp03036
]
116687916 (chd5)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116687916 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
116687916
NCBI-ProteinID:
XP_032369530
LinkDB
All DBs
Position
4:29745435..29806275
Genome browser
AA seq
2004 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDDGERNAVPLTPLGSFFSDNDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQPRVDSDLEETSEVEEERERPEVGSESENSTFGPTKKKKKKPKE
KKEKKPRKKKREEEDDDDDNDDGNLKEPKSSGQLMQEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTTVGSGHPSPPLGPIKKAKTKEGKGPGVRKRSKSVKEVKKKPKPKKTKSKSGQSGKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDEEEEEE
EPACEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPL
KGKVQKILHWTWGEPPLPAEPPAGPDGKPTDPLTQPPLKGHPEREFFVKWAGLSYWHCSW
VSELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNSEKRKSKDPHYAGMEERFYRY
GIKPEWMVIHRIVNHSYDTDGDVHYLMKWRDLPYDQCTWEVDDFDVPEYDGHKASYWDHR
EQILGEDQRPLVVRKGKKLKEDHPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQL
EGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWE
REFEMWAPDFYVLTYTGDKDSRAVIRENEFTFEDSAVKTGRKVFRMKKDTPIKFHVLLTS
YELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEE
LFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTE
LIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE
APVLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGY
KYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPH
NDIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMS
KQELDDILKFGTEELFKDEMEAARAMGDNKEGEEGNVIHYDDDAISKLLDRSQDATEDTE
IQNMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR
NLGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQ
MKNEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGK
SEREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEH
VNGKLSSPDLIPIGMELKKLTESLSSDPNTPVPASPVATQPGTPVPPEKNESLLGTAEDK
ETTEQDSKRLSEQESSSAEPASVPEKAADSEESKASSEEKTGDERDRTESPSKTEPSANP
KEPALKLSELSSTQTSPKMETCKDTEKSSEKGATDSPLAKTEDKENKPAVADDLKSEDAS
EGRLNGDKDNLDDMEESRKEDKNGYKVKFMFNIADGGFTELHTLWQTEERAALSSGKMHD
IWHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFK
LLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFTEVECLAESHQHLSKESLAGNKPAN
AVLHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQ
PFSQGGFGCSQMYSSSFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSL
DSLRDVATPDLKSGKPSDVICIED
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagcaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagatgaggatgacgatggggagcgcaacgctgttcccctcacgcccctcggcagc
ttcttctctgacaacgactcgctcaaacaacaaaagaagaagaagcccaaaaagatgaaa
gaggggaagatgcccaaagttaagaagaggaaaaaggagggaggaatccagccccgggtt
gacagcgacctggaggagacctccgaggtggaggaggaacgggaacgtccggaagtcggc
tctgagagcgagaacagcacgttcggcccgaccaaaaagaagaagaagaaaccaaaagag
aagaaagagaagaagcccaggaagaagaagagagaggaggaagatgacgacgatgacaat
gatgatgggaacctgaaagaacccaaatcctccggccagctgatgcaagagtggggtctg
gaagacgttcagtacggcttcaccgaggacgactacaaaaccatcactaactacaaggct
ttcagccagttcctcaggcctctcatcgccaagaagaacccgaagattcccatgtcgaag
atgatgacagtgttgggggccaagtggcgagagttcagcgccaacaaccccttcaaaggc
gcatctgccaccgctgtcgccgccgctgtggctgccgccgtggaaacggtcaccgtggct
cagccaacgaccgtcggcagtggccatccgagtcctccgctggggccaatcaaaaaagcc
aaaaccaaagaaggaaagggaccaggagtcagaaagagaagcaagtctgtgaaggaggtc
aagaagaaacccaagccgaagaagaccaaatcaaagtcgggccaaagtgggaagaagaag
aaagcatcctcgagtgaggaggacttcctggaggagtccgactttgatgacatcagcatc
cacagtgcctcggtgctttctgacacctcgggggccgccaccaagaaaaaggctcgacgt
gggcggaaaaaacggaaaaaagaagacggggacggttatgagacggaccaccaggactac
tgcgaggtttgccagcaggggggagagatcatcctgtgtgacacctgtccccgagcgtac
cacctggtctgtctggacccggagctggagaaggctcccgagggcaaatggagctgccca
cactgtgagaaagagggcatccagtgggaggccaaagacgatgaggaggaggaggaggag
gagccggcatgcgaggaagaggatgaccacatggagttttgccgagtgtgtaaagatgga
ggagagctgctgtgttgtgacacctgcccatcttcctaccacatccactgcctgaacccc
cctctccccgagatccccaacggggagtggttgtgtccacgctgcatgtgccctcccctc
aaaggtaaggtccaaaagattctgcactggacatggggggaacccccgttgccagctgag
ccgcctgccggccctgacggcaagccaaccgatccgctgacccagcctccgctcaagggc
cacccagagagggagttcttcgtcaagtgggccggcctgtcgtactggcactgctcctgg
gtcagcgagctgcagttggagctgtaccacacggtcatgtatcggaactaccagcgtaag
aacgacatggacgaacccccgccgtacgactacggctccggggaggaggagctcaacagc
gagaagaggaagagcaaagacccccactacgccgggatggaggagcgcttctaccgctat
ggcattaaaccagagtggatggtcatccaccggatagtgaaccacagttatgatacggat
ggggatgtgcattacctgatgaagtggagagacctgccctacgaccagtgcacctgggaa
gtggatgattttgacgtcccagaatacgacggccataaagcttcttactgggaccacagg
gagcaaatactaggggaggaccaacgccccctggtggtgaggaaaggaaagaaactcaaa
gaggaccatccaaagagagaggtccctcctgatgctcccatcatagatccgaccatcaag
tttgagcaccagccgtggtacatcaacgccacgggggggacgctgcacccgtaccagctg
gaaggcctgaactggttgaggttctcctgggcacagggtacagacaccatcctggccgat
gagatgggcctggggaagacggtgcagaccatcgtgtttctctactccctctataaggag
ggccactctaaggggcccttcttggtgagtgcgcccctctccactatcatcaactgggag
agggaatttgagatgtgggctccagatttctacgtgctgacttacacgggagacaaagac
agccgggcagtcatcagggagaacgagttcaccttcgaagacagtgcagtgaaaacagga
cgcaaggtgtttcgcatgaagaaagacactcctatcaagttccacgtgctgctgacatcc
tacgagctgatcaccatagatcaagccattctgggctccatcacgtgggcctgcttggtg
gtggacgaggcccatagactgaagaacaaccaatcaaagtttttcagaattctcaacggg
tataagatctactacaagctgttgctcactgggactcctcttcagaacaacttggaagag
ctgttccacctgcttaacttcctcaccccagagcgcttcaataacctggaaggcttcctg
gaagagtttgctgatatttctaaagaggaccagatcaaaaagctccacgacctgctcggc
cctcatatgctcaggaggctgaaggccgatgtcttcaagaacatgcccgcaaagacagag
ctgattgtcagagtggagctcagccctatgcagaagaaatattacaagtttattttgacg
cggaatttcgaggctttgaactccaaaggtggagggaaccaagtgtccctgctcaacatc
atgatggacctgaagaagtgctgcaaccatccctacctgttccccgtggctgctgtggaa
gctcctgtattacccaacggctcgtatgacggtaacctactggtgaaatcctcaggaaaa
ctgacgctgcttcagaaaatgctgaagaaactcaaagatgaaggacacagagttctcatt
ttctctcagatgacaaagatgttggatctgcttgaagattttttggagttcgagggttat
aagtatgaacgtatcgatggaggaattactggaggcctgaggcaggaggccattgaccgc
ttcaatgcgccgggcgctcagcagttttgcttcttgctttcaacacgagctggaggtctt
ggcatcaaccttgcgagtgcagacaccgtcataatctacgactctgactggaatcctcac
aatgacatccaagcttttagcagagcccatcgtataggccagaatagaaaggtgatgatc
taccgttttgtgacgcgaggctcagtggaggagcgaatcactcaggtggcaaagaggaag
atgatgctgacccacctggtggtgcggcccgggctgggctccaaaactggctccatgtcc
aaacaagaactggacgatatcctcaagtttggcaccgaggagctttttaaagatgaaatg
gaagcagcacgagccatgggtgacaacaaagaaggcgaggagggcaacgtgattcactat
gatgacgacgctatctcgaagctgttggaccgcagccaggacgccactgaagacacagag
attcagaacatgaacgagtacctgagctccttcaaggtggcccagtatgtggtgaaagaa
gaggatggagaggaggaggtggagcgggagatcatcaagcaggaggagaacgtggatcca
gactactgggaaaagctcctccgccaccactacgagcagcagcaggaggatctggcccgc
aacctcggcaaaggcaaacgcatccgaaagcaggtcaactacaacgatacgacccaggag
gaccaagagtggcaggatgatctttcagacaatcagtcggagtactctgtggggtccgag
gatgaggacgaagatttcgaggagaggcctgaaggtggacgcagacagtctcgtcggcag
atgaagaatgagaaggacaaacctctgccccccttactggcccgagttgggggcagtatt
gaggttctggggttcaacgctcggcagaggaaagccttcctcaacgccatcatgcgctgg
ggcatgccccctcaggatgctttcaactcccattggctggttcgagacctgagggggaag
agtgagcgtgagttcagggcctatgtgtctctgttcatgagacatctatgtgagccaggg
gcggacggagcagagacctttgctgatggggtcccacgggagggactgtctcgtcagcat
gttctcaccaggatcggagtcatgtcccttgtcaggaaaaaggtgcaagagtttgagcat
gtaaatggaaagctgagttctccggatctgattcccatcggcatggagctaaagaaactg
actgagagtttgtcttctgatcccaacacccccgtgccagccagccctgttgctacgcag
cctggcactcccgtccccccagagaagaatgaatctctcttgggtaccgctgaagacaag
gagaccacagagcaagatagcaagaggctgtcagagcaggaatcttccagtgcagagcca
gcatctgtacctgagaaggcggctgacagcgaggagagcaaggccagctcagaggagaaa
accggagatgagagggacagaaccgagtccccctcaaaaacagagccatctgcgaaccca
aaagagcctgctctgaagctgtcagagctatcatccactcaaacctcacctaaaatggag
acctgcaaagatacagaaaagtcctcagaaaaaggagctacggattctcctctggcaaaa
actgaagacaaggaaaataagccagctgttgcagatgatttgaagagtgaagacgcatca
gagggccgattgaatggagacaaagacaatttggatgacatggaggagagcaggaaagag
gacaaaaatggatacaaagtcaagttcatgtttaatatcgctgatggaggtttcacagag
ttgcacaccctctggcaaactgaagagcgggcggcgctgtcctctggaaagatgcacgac
atctggcaccgtcgccatgactactggcttctagctggcatcgttactcatggctacgct
cgttggcaggacattcagaatgacccacgttacgctattctgaacgagcccttcaagact
gagatgcataagggcaactacctagagatgaagaacaagttcctggctcgccgctttaag
ttgttggagcaggctctggtgattgaggagcagttgaggcgggcagcctacctgaacatg
acccaggacccgagtcacccggccatggctctcaacactcgcttcactgaggtggaatgt
ctggcagagtcccaccagcacctgtccaaagagtccctggccgggaacaagcctgccaat
gccgtgctgcacaaagtgctgaaccagctggaggaacttctaagtgacatgaaagcggat
gtgacgcggctgcccaacatgctgtccaggataccgccggtgtcggcccgtctgcagatg
tccgagaggagcatcctgagccgcctcaccagccgagggagcgagcctccaccacagcag
cctttcagccagggtgggttcggctgctcccagatgtacagcagcagcttcggtggagga
ttcagaggaccgggtggacagcccatggtcaactacagccagatgcctctgggaccctac
gtcagcgtgtcctcgaacggccctccaccccctacaagccatctggacaagaagtcgctt
gactccttgagagacgtggccacgcctgacctcaagtcaggcaaacctagtgatgtcatc
tgtattgaggactag
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integrated database retrieval system
