Etheostoma spectabile (orangethroat darter): 116688266
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Entry
116688266 CDS
T08457
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116688266 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116688266 (smarcd1)
03036 Chromosome and associated proteins [BR:
esp03036
]
116688266 (smarcd1)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116688266 (smarcd1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116688266 (smarcd1)
PBAF complex
116688266 (smarcd1)
GBAF(ncBAF) complex
116688266 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
116688266
NCBI-ProteinID:
XP_032370060
LinkDB
All DBs
Position
4:9881636..9900565
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AA seq
514 aa
AA seq
DB search
MAARGGFQSAPTGGGGGAMGPGPPVPGAGPGMGPGTPSGRMVPSSAAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGNSPVSRPVMPGVMDPSRKRPAPQQIQQVQQQNRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRL
HALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLD
NKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEF
YYQPWAQEAVCRYFYSKVQQRRQELETALGIRNT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggggggtttcagtcggcaccgacgggaggtggtggtggagcaatggga
cctggaccaccggtaccgggcgcaggaccaggcatgggccccgggactccttctggaagg
atggtaccgtcgtcggccgcgcagaaccacatgtaccgctccccgatgcctgggcccggg
tacccgagaccaggcatgcctccatccagccgcatgaccccacagggaccagccatgggc
cccccaggatatggcaacagcccagtgtctcgccctgtaatgcctggcgtgatggacccg
tctcgcaagaggcccgccccccaacagatccagcaggttcagcagcagaaccgcaaccag
cacacaaagaagaagaagatggctgataaaattctacctcaaaggatcagggaactggtc
ccagagtctcaggcatacatggatctgctggcttttgagaggaagctggatcagaccatc
atgcgcaagaggctggacattcaggaggctctcaagaggcccattaagcaaaagagaaag
cttcggatctttatatcaaacaccttcaaccccgcaaagccagatgccgaggatggagaa
ggcacagttgcatcatgggagctacgtgttgagggacgtctgctggaagatacggctgtg
tcgaagtatgaagccaccaaacagaagaggaagttctcctctttcttcaagtctctggtg
attgaattggacaaagacctgtatggtccagataatcaccttgtggaatggcacaggact
gccaccacacaggagactgatggttttcaggtgaagaggcctggtgatgtgggtgttcgc
tgcaccgtcctgctcatgctcgactaccagccccctcagttcaagctggacccccggctg
gctcgtatgctgggtatccacacccagactagaccggtcatcattcaggccctgtggcag
tacgtcaagacccacaaactccaagaccctcatgagcgcgagttcatcaactgtgacaaa
tatctgcagcagatcttcgagactcagcggatgaagttctccgagatcccgcagcgcttg
catgctctcctgatgccccctgaaccaattatcatcaaccatgtgatcagtgtggatcct
aatgaccaaaagaagacagcttgttatgacattgacgtggaggtggatgacacgctaaag
acccaaatgaactctttcctgctctccacagccagtcagcaggaaatagcaggactggac
aacaagatccatgaaaccattgagaccattaaccagctgaagacccagagagagttcatg
ttgagttttgccagagatcctcagggctttatcaatgactggcttcagtcccagtgcaga
gacctcaagaccatgacagatgtggtaggaaacccagaagaagagcgaagagcagagttt
tactaccagccgtgggctcaggaggctgtctgccgctacttctactccaaggtccagcag
aggcgacaggagctggagacggcgctcggcatcaggaacacctag
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