Etheostoma spectabile (orangethroat darter): 116688362
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Entry
116688362 CDS
T08457
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116688362 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116688362 (smarcc2)
03036 Chromosome and associated proteins [BR:
esp03036
]
116688362 (smarcc2)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116688362 (smarcc2)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116688362 (smarcc2)
PBAF complex
116688362 (smarcc2)
GBAF(ncBAF) complex
116688362 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
116688362
NCBI-ProteinID:
XP_032370259
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All DBs
Position
4:18732111..18742636
Genome browser
AA seq
1057 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEPKLLGKLKDIIKRHQGSVTEDKASSSHVVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYFPDGYDTWIPASEIEAAVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPASEEGNPPKTN
STKKDSDSTPVKGGTDMDEQEDESMETAGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPAAQQIMSFPDKVKEKPADLQNFGLRTDMYSKKTGSAKSGGDICAQSKSTAS
SMREWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDNSSSL
GPLAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHV
RRVEEAARVSGRQDPLYGLEGSGIAGTGLEEGDRPDESSDESKSDSQPTEEKREAKDSKD
GATEEEEKQAENGKKEEERGREQEGEREADKTESEMGDGEKEKDGKEGTEEGQRDAESEG
ERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQGG
GPHANQAAPAPPPQGPTASQQAPSTPALQPAPSPAPPASAPAPESQPPQGAHTSPPRPQG
STPVAHSSSSTTPVLHEPSTQLPGETLHSSAPVPPPQ
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtttctcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gccgagccccctaccaacaagtctctgtctagcctggtggtccagctgctccagttccag
gaggaggtgttcggtcggcatgtcagcaaccctccgctcaccaagctgccgatgaaatgt
tttctggacttcaagtcaggaggggctctctgtcacatcctggctgctgcctataagttc
aagagtgaccaaggatggcgcaggtttgacttccagaatccgtcgaggatggaccgaaat
gtcgagatgttcatgacgattgagaagtctttagtgcagaacaactgcctgagtagacca
gtcatctacctgagctctgacatagagccaaaactgcttgggaaactgaaagacatcatc
aaaagacatcagggttcagtaactgaggacaaggcctccagctcccatgttgttgttcct
attcccaccagcctggaggaagaggagtgggtgcgtcctgtgatgaagagagataagcaa
gtcctgctccactggggatattttcctgacggttatgatacctggatcccagccagtgag
attgaggctgctgtggaggatcctcccagcccagaaaaacccaggaaggtccatgccaag
tggattttagacctggaccagtataatgagtggatgaatgaggaggactatgaagtgggc
gagggctgccctaagaggaagaggatctcagccaaaaccctgacagatgaggtgaccacg
cctgacgagcggagggacaagaagcccggcagcgccaagaagcggaagaggtcgccgtcg
ccgtcccctacccctccacctcaggagagcaagaagaagaacacaaaaaaagggccaacg
acgccgtacaccaagtctaaacggggccaaagggaggaggaacaggaggatctaagtaaa
gacttggatgaagcatcacctgttcccgcatctgaagagggaaacccacctaagacaaat
agcaccaagaaggactctgattcaactccagtcaagggaggaacagatatggacgagcaa
gaggatgagtccatggaaacagcaggcaaggaggaggaggaaggctctccaagcgtaaag
ggtgaaccagtgaaaggctctgaccttcacgaggacaatgtgactgagcaaactcatcac
attattataccgagctacgctgcctggttcgactataacagtgttcatgccattgagcgc
agagccctgccagagtttttcaatgggaagaacaaatccaaaaccccagagatttacctg
gcgtacaggaatttcatgattgacacctaccgactgaaccctcaggagtacctgacctcc
actgcctgccgcaggaacctggcaggagacgtgtgtgcaatcatgagagtccacgccttc
ctggagcagtggggcctgattaactaccaggtggactccgagagccgacccacacccatg
ggtcctccacccacttctcactttcatgtccttgcagacactccatccagtctggtaccc
ctgcagcccaaaacgtcccagacccctgctgcccagcagataatgtccttcccagataaa
gtgaaggagaaaccagcagatctgcaaaactttggcctgcggactgacatgtacagcaag
aagactggctctgcaaagagtggtggtgatatttgtgcacagagtaagagtacagcgagc
tctatgagggagtggacagaacaagaaacactactactacttgaggggttggagatgtac
aaggatgactggaacaaggtttcagaacatgtgggcagccgtacgcaggatgagtgcatc
ctgcacttcctgaggctgcccattgaagacccttacttggaggacaactcctcgtccctt
ggaccactggcctaccagccagtacctttcagccaggcaggaaaccctgtcatgagcaca
gtggccttcctcgcctctgttgtcgacccacgcgtggcctcagctgcagccaagtctgct
ctggaggagttttcccgtatgaaggaggaggttcctgcagcgctcgttgaggctcatgtg
cggcgggtggaggaggcagcgagggtcagtggccgacaggatccgctgtatggcctggag
ggtagtggcatcgcaggcaccggactagaggagggagacagacctgatgaaagcagtgat
gaaagtaagagtgacagccaacccactgaagagaagagggaggccaaagacagcaaagat
ggagcgacggaggaagaggagaagcaggcggagaatgggaagaaggaagaagaaagagga
agagaacaagaaggagagagggaggcggacaaaacagagtcagagatgggtgatggggag
aaggagaaggatggaaaagagggcacagaggaaggacaaagagatgcagagagtgaagga
gagaggaaggctaaggtggagcgggatgtgggagaggggaacctggccactgctgctgcg
tctgcacttgctgctgctgctgtcaaagccaagcacctggctgcagtggaagagaggaag
atcaaatctcttgtggctctgctggtagagacccaaatgaagaagctggagattaaactg
cgacactttgaagaactggaaaccatcatggacagagagagggaggctttggagtaccaa
cgtcagcagctgctggctgaccgtcagtccttccacatggagcagttgaaatacgccgag
atgagagcccgccagcagcacttccagcagattcagcaccagcagcacagccagggcggg
ggccctcatgccaaccaggctgctccagccccgccaccccagggtccaaccgcaagtcag
caagcgcccagcacaccagcgctgcagccggcccccagtcctgcacctccagcctctgcc
cccgcccctgagtcccaaccacctcagggtgctcacacctcgcccccccgcccccaaggc
tcaacccccgttgcccactccagctccagcactactcctgtactccatgagcccagcacc
caacttcccggggaaacactccactcctcagctccagtcccacctccacagtga
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