Etheostoma spectabile (orangethroat darter): 116688445
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Entry
116688445 CDS
T08457
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116688445
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116688445
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116688445
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116688445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
116688445
NCBI-ProteinID:
XP_032370372
LinkDB
All DBs
Position
4:7358508..7406019
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLTVVRCQDENDQEDVFSCTQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQAPPIGTPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQA
GPMGPRGPAGPPGKPGDDGEAGKNGKPGDRGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGTSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPP
GVQGAHGPQGEEGKRGPRGEAGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGSAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ
GARGLPGTPGTDGPKGAIGPAGTGGAQGPPGLQGMPGERGASGIPGPKGDRGDLGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGAAGPPGEK
GDAGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPVGAPGAPGAPGAA
GPVGPTGKQGDRGESGAQGPSGPSGPAGARGMPGPQGPRGDKGEVGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGET
GPSGPPGNTGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVRPKPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtctgtcta
ttaactgttgtaagatgtcaagacgagaacgaccaggaggatgtttttagctgtacacaa
gatggacagcgctatagtgacaaggatgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgcgcagctgaccaggctccaccc
attggaacacctggagcgaagggtcaaaaaggtgaacccggagacattaccgatgttgta
ggaccaagaggaccaagtggcccaatgggcccaccaggagagcaaggaccccgaggagcg
agaggagataagggagagaagggaagtcctggtccccgcggcagagatggtgagcccggc
acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggatttgacgagaaagctggtggtgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccaccgga
tcacctggcccacaaggtttccaaggtaacccaggagaggctggagagcccggacaggct
ggcccaatgggtccccgtggccccgctggacctcccggaaaacctggagatgatggtgaa
gctggcaaaaatggtaaaccaggtgaccgtggacctgctggacctcagggagctcgtgga
ttcccaggaacacctggcctgcctggcattaagggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggagctgttgggtctaagggtgagtctggtgctcctggagaa
aatggtgctcctggacctatgggaccacgtggtttgcctggtgagagaggacgtcctgga
cccagtggagttgccggcgcacgtggaaatgatggcttgcccggtcctgctggtccccca
ggccctgtcgggacctcgggagctccaggcttccctggctctcctggttcaaagggagaa
gctggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggcgagtctggc
actcctggatcacccggaccttctggcgcttctggaaaccctggtactgatggtatcccc
ggagccaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctcctgggcctcaaggagcaactggacctctcgggcccaaaggaacatctgga
gacccaggtatcccagggttcaagggagaggctggacccaaaggagaaattggaccgcct
ggtgttcagggagctcatggcccacaaggagaagaaggcaagagaggacccaggggtgag
gctggtgctgctggaccacttggacctcctggagagagaggagcacccggtaaccgtggt
ttccctggtcaagacggtctggctggtcccaagggagcacctggtgagcgtggacctgct
ggtgccagtggtcccaagggtgccaacggtgaccctggccgtcctggagagtctggtctg
cccggtgccagaggcctgactggacgccctggtgacgctggtccacaaggcaaagttgga
ccttctggagcttctggtgaggatggtcgcccaggaccccccggcccacagggagcccgt
ggacagcctggtgtcatgggattccccggacccaagggagcaactggtgagcccggcaag
tcgggagaaaaaggactgggtggagctcctggtctgagaggtctgcctggaaaagatgga
gaaaccggtgctgctggaccccccggcccagccggctctgctggagagagaggagagcaa
ggacagcctggtccctcaggtttccagggtctgcctggacctcctggcccccctggtgag
ggaggcaagcccggagaccagggtgttcctggagagggtggagctgctggtgctactgga
cccagaggagagcgtggtttccccggagagagaggagctgccggccctcagggtctgcag
ggagcccgaggtctgccaggaactcctggaactgacggacccaagggagcaattggacct
gctggtactggtggagctcagggaccccccggcctgcagggcatgcctggagagagagga
gcttctggcattcctggacccaaaggagacagaggtgatcttggagagaaaggacctgaa
ggtgctcccggcaaagacggcggtagaggtctcactggtcccattggtccccctggtcct
ggtggtcccaacggcgagaagggtgaatctggtcctgccggtccttctggtgctcctggt
acccgcggtgctcctggtgacaggggtgaaactggacctcctgggcctgctggatttgct
ggaccccctggttctgatggtcaacctggaatcaagggagagcagggagaatctggacag
aagggtgacgctggtgcccctggaccacaaggaccctctggtgcccccggacctgcaggt
cctaccggtgtttttggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttccctggagctgccggccgagttggaccccctggtcccaatggtaatcctggacct
gctggtcctgctggcccttccggtaaagatggacccaagggtgtgaggggagatggtgga
cccccaggcagacagggtgatgctgggctccgcggtgctgctgggcctcctggagagaag
ggagatgctggggaggatggtccccctggtcccctcggcccttcaggtcctcagggtttg
gctggtcagcgcggtattgtgggtctgcctggacagcgtggtgagagaggtttccctggt
cttcccggaccttctggtgagcccgggaagcagggagctcctggtggcagcggagaccgc
ggaccccctggacctgttggaccccctggactcactggacctgcaggagagcctggcaga
gagggtaatcctggatctgatggacctcctggtagagatggtgctactggaatcaagggt
gatcgtggtaacactggtcctgttggtgctcctggtgctccgggcgcacctggtgctgcc
ggcccagttggccccaccggcaaacagggagaccgaggagagtctggtgcacaaggacct
tctggaccttcagggcctgctggagccagaggaatgcctggaccccaaggaccccgcggt
gacaagggtgaggttggagagtccggtgagcgaggacagaagggacacagaggcttcact
ggtctgcaaggtctgcccggacctccgggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggaccacctggacctgttggccctgctggaaaggatggt
ggaaacggtctgccaggacccattggaccccctggacctcgtggtcgcagtggagaaacc
ggtccctctggtccccccggaaacaccggaccccctggtcctcctggtccccctggccca
ggcatcgacatgtctgcctttgccggtctgggtcaaactgaaaagtcccctgatcctctc
aggtacatgagggccgaccaggcttccggaaacctccgtcagcacgatgctgaggtcgac
gccacgctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aaaaacccggctcgcacctgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcccaaccagggctgcaccgtcgatgcaatcaaggtcttctgcaac
atggagacaggagagtcctgcgtcagaccgaagcctgccagcatcccacgcaagaactgg
tggtccagcaagagcaaggaccgcaaacatgtctggttcggagagacaatgaatggaggt
ttccacttcagctatggtgatgacagcctggcacccaacactgctgccattcagatgact
ttcctgagactgctgtccaccgaggcttctcaaaacctcacctaccactgtaagaatagc
gtggcctacatggacgcctcaacgggcaacctgaagaaggctgtgctgctgcagggctcc
aacgatgtggagatcagagctgagggcaacagccgcttcacttacagcgtgatggaggac
ggctgcacgaaacacacgggtcagtggggcaagacagtgatcgaatacagatcgcagaag
acctctcgtctgcccattgtagacattgcccccatggatattggaggaacagaccaggag
tttggggtcgaagtcggggcagtctgcttcttgtaa
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