Etheostoma spectabile (orangethroat darter): 116689114
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Entry
116689114 CDS
T08457
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
esp03036
]
116689114 (shoc1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116689114 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
IpaB_EvcA
Motif
Other DBs
NCBI-GeneID:
116689114
NCBI-ProteinID:
XP_032371378
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Position
5:18427768..18439129
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AA seq
971 aa
AA seq
DB search
MEVKPATLIFSKPAAITNTNEDVSDRRFLEVGFPARKNDVDTSRDDCRTERSVVSSRDNH
RGLLVTKQPSEKDLDPLSTFMILRSQQLAQVTATPQSSTPAPNGHQQTPPSAHHQLPPEQ
MQRSDQRPMHISGAVSGIATREQKAVFQSMGQLISHPVRQSIPQDRQDSRVVQVQATESQ
QHAHCELRAFAQPCLNSARQLGLNFPILGDFSCLSPDQTHFLLKQQEKALCRTQSAELVR
DQKVLFDQAALIHVLVTFKELLLKCDLSTALDYLIKAAEVCAERSLEQLVKRLQILLYLN
HKNEECNLKLLELQQLLIAWLHGRTGQNTVEKILVIISVDSDDIRSSIVSSLSHAAGAAV
TALCPEEDKKKLNGASVVSSTCDSVCVVVYEQHVGPDFPWSCFSLVVEYDNPGQSPWVNV
CKERSISHLAFNTILSDTEKEKASWCLEDNVPYVLSVTEGLLNCPLLLQTLESGFNITVL
ERSHCPSLQMLGGTHHYAVITVDESTAIVIQEQDELCQERASEGVVMRLTALSLQYNCCW
LILHCSDSHGGGFSSEAFSNLVLVYSSLVLFSMKFEDLDVKVLIVSDVTEIAKWISQICF
HSLMASKKDPVDYLDRDWLTVIPSEEEKCLMQFPCINPLVSQLMLNRAPSIQWLLGASLS
QLMELLPEVPHKVLKLFNDTTSLYTLTPAQPEAQTFITETDQQSSPPNSSCTTTAHPEHM
NPDPQPEPPINPHPELFCSDHNTSFLFGADRSFCQPDPGSVVQESNTDFRLDLSSSFGSP
DVHLQRSWNSRDPWQEEDRGREEVAFSGWRRRAGAVGRVVVRVNDEWAQKAPTNLYADTP
GVHLDSPFKLDSAFSYSPVLQQPVNSQMSSYSTVYTDLQHPENPHISYGPSPPPKATPWS
QNQSSLKCLNNREATTFSTNYGSKCWIGQERKRRGEAAGFVGTVVTPVKRGRLSYEKVPG
RSDGQTRLKLF
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaaaacctgcaaccttaatattttcaaaacctgctgctatcacaaacaccaat
gaggacgtttccgacaggaggtttttagaagttgggtttcctgctcgtaagaacgacgtt
gacacaagtagagacgactgtaggacagagcggagcgtcgtgtcctccagagacaatcac
agaggtctgctggttacgaaacagccatctgagaaggacctggacccgttgtccaccttc
atgatcctgagatctcagcagttggctcaggttactgcaacaccccagagctcaactcca
gcaccaaacgggcaccagcaaacaccaccatccgcgcatcatcagctccctccagagcag
atgcaaagatcagatcagaggcccatgcacataagtggtgctgtctcaggaattgccacc
agagagcagaaagcagtctttcagtcgatgggtcaactcatcagtcatcctgttcgtcag
tccatccctcaggacagacaggacagcagagtagtccaagtccaagctaccgagagccag
cagcatgcccactgtgagctgcgggcctttgctcagccttgtttaaactctgctcgacag
ctggggctcaacttcccaatattgggagacttcagctgcctgtccccggaccaaacacac
ttccttctcaaacagcaggagaaggcgctctgcaggacacagagcgcagagctggtcaga
gatcagaaagtgcttttcgaccaggcagctctgattcatgtgctggtgacattcaaggag
ctgctgctgaagtgcgacctcagtactgcgttggattacctgatcaaggcagctgaggtg
tgtgctgagcggagtctggagcagctggtgaagaggctgcagatcctcctctacctcaat
cacaagaacgaggagtgcaacctcaaactcctggagctgcagcagctgctgattgcatgg
ctgcacggcaggacaggacagaacactgtggagaaaattcttgtcataatatcagtcgac
tctgacgacatcagatcttcaatcgtcagcagtttgagccacgccgctggtgctgctgta
actgcactttgtcctgaggaggacaagaaaaaacttaacggtgccagtgtggtcagcagc
acatgcgacagtgtgtgtgtggtggtgtatgagcagcacgtagggcctgacttcccctgg
agctgtttctctctggtggtggagtatgacaatccaggccagtcgccatgggtgaacgtg
tgcaaagagaggagcatcagtcacctcgccttcaacacaatcctctccgacactgaaaag
gaaaaagcctcgtggtgcctggaggacaatgtgccatatgttttgtcagtgacagagggg
cttcttaactgtccactgctgctacagacactcgagtcagggtttaatataactgtgctt
gagaggagccactgtccgtccctgcagatgctcggaggaacccatcactacgctgtaatc
acggtggacgaaagcacagctattgtcattcaggagcaggatgaactttgtcaggagaga
gccagtgagggagtagtgatgaggctcactgctctctctttgcagtacaactgctgttgg
cttatcctgcactgtagcgacagccatggaggaggattttccagcgaggcgtttagcaac
ttggtgttggtttattcgtctctggtgctcttcagtatgaagtttgaggatctagacgtc
aaggtgctgattgtgtctgacgtgactgaaatagccaaatggatcagccagatctgcttc
cacagcctgatggccagtaagaaggaccctgtggactacctggacagagactggctgact
gtgattccctcagaggaggaaaagtgtctgatgcagttcccatgtattaaccctctggtt
agtcagctaatgctgaacagagctccatccatccagtggctcctgggggcctcactgtct
cagctaatggagctgctccctgaggtgccacataaagttctcaagctgttcaatgacacc
acctccctgtacacactgaccccagcgcagccagaagctcagacattcatcactgagaca
gaccaacagagcagtccaccaaacagctcctgcaccaccactgctcaccccgaacacatg
aaccctgatccacagccagaaccccccatcaacccccacccagaactattctgtagtgac
cacaacaccagcttcctgttcggagctgatcgcagcttctgtcaaccagacccaggctca
gtggtgcaggagagcaacacagatttcagactcgacctgagttcttcctttggcagccca
gatgttcacctccagaggagttggaacagcagggatccatggcaagaggaggacagaggc
agagaggaggtggcgttttctggctggagacgcagagctggggcagtggggagagttgtt
gtaagagtgaacgatgagtgggcacagaaagctcctacaaacctctacgcagacactcct
ggagtccacctggacagtcctttcaagctggactctgcgttcagttacagccccgtcctg
cagcagccggtcaacagtcagatgtcctcgtactctacagtctacactgacctccagcat
ccagaaaacccccacatttcctatggtccgagccctcctccaaaggccacgccgtggagt
caaaatcaaagcagcttaaaatgtcttaataatagagaggcaacgactttttcaactaac
tatggctccaaatgctggataggacaagagaggaaaagaaggggtgaggctgcaggtttt
gttgggacagtggtgacaccagtgaaaagggggaggttaagctatgagaaggtgcccggc
cgaagtgacggacagacgagacttaaattgttttag
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