Etheostoma spectabile (orangethroat darter): 116689174
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Entry
116689174 CDS
T08457
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03082
ATP-dependent chromatin remodeling
esp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116689174 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116689174 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
esp01009
]
116689174 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116689174 (smarcb1)
03036 Chromosome and associated proteins [BR:
esp03036
]
116689174 (smarcb1)
Protein phosphatases and associated proteins [BR:
esp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116689174 (smarcb1)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116689174 (smarcb1)
SWI/SNF complex
116689174 (smarcb1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116689174 (smarcb1)
PBAF complex
116689174 (smarcb1)
SWI/SNF complex
116689174 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
116689174
NCBI-ProteinID:
XP_032371484
LinkDB
All DBs
Position
5:complement(13574967..13584598)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaaccggttaaatttcagctcgaggaggatgga
gacttttacatgattggatcggaggtgggaaactacctccgtatgttcagaggctctctg
tataaaagatacccgtcattatggagaaaactggcttcggtggaagaacggaagaaaata
gtggagtcatcacacgatcacggctacactcagctggccaccagtgtgactctgctgaag
gcttcggaggtcgaggagatacttgaaggaaacgacgagaagtacaaagctgtctcgatc
agcactgagccccctgcctacctcagggagcagaaggcgaagaggaacagtcagtgggtt
cccacgctgcccaacagttcccaccacctggatgcggttccctgctccaccaccatcaac
cgcagccgactgggccgcgataagaagaggaccttcccactgtgctttgacgaccacgac
ccagcagtgatccacgagaacgccactcagtctgaagttctggttccaatccgtctggac
atggagattgagggacagaagctcagagacgctttcacctggaatatgaacgagaagctg
atgacgccagagatgttcgccgagatcctttgcgatgacctggacctcaacccgctggcc
ttcgtccctgccatcgcctcagccatccgacagcagatcgagtcttatccgacagacagc
atcctggaggagcagacggaccagcgggtcatcatcaagttgaacatccatgttgggaac
atctccctggtggaccagtttgagtgggatatgtctgagagggagaactctccagagaag
tttgccctgaagctttgctctgagctcggcctcggcggagagtttgtcaccaccatcgcc
tacagcatccgcggtcagctgagctggcaccagaggacatacgccttcagtgagaacccg
ctgcccacagtggagatagccattagaaacacaggcgatgccgaccagtggtgccccctg
ctggagaccctgacggacgcagagatggagaagaagatcagggatcaggacaggaacacg
aggcgaatgaggcgattggcgaacacggcccccgcgtggtag
DBGET
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