Etheostoma spectabile (orangethroat darter): 116689341
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Entry
116689341 CDS
T08457
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116689341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116689341
03036 Chromosome and associated proteins [BR:
esp03036
]
116689341
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116689341
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116689341
Chromatin remodeling factors
BAF complex
116689341
PBAF complex
116689341
GBAF(ncBAF) complex
116689341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116689341
NCBI-ProteinID:
XP_032371770
LinkDB
All DBs
Position
5:complement(15805624..15858537)
Genome browser
AA seq
1584 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGM
QGQGQSEYSQDSMYPMHKTMDGMNEKTMADAMHFGHMKGVGMRSLHSGMGPPQSPMDQHS
QGYISPHPSPMGVHEHASSPMSGGGRGPTPPHMPPTQSGPMIPMDPQSAVPNMSNMSQQG
RGPSAFSPVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQQQPQQQ
APIASPYNRPPGMPMAPLGGPQSSPCPTPTMQGHNQSTGPKPWSDGQGGENQANAQKHLT
PVPSGRPSPAPPQVSAVPAGLMPGSSVTPQPPGQQVSPMLQMQKQNRITPVQKPQGLDPV
GILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACM
RRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEYLNSILQHAK
DFKEYHRSVSGKMQKLTRAIANWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQ
KKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKKKKKKKKMADGDGEGPSAIGPDG
EPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSE
FEEEEEEEGAKAETEDKKIIDPNGVEMFVVATKHIIESAKQDVDDEYSVPTGQTSSQSYY
GVAHAVIERVEKQSSLLINGSLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIAL
ITYLMEHKRINGPFLIIVPLSTLSNWVYELDKWAPSVVKIAYKGTPVLRRGLVPQLRSGK
FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT
PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVL
RPFLLRRLKKEVESQLPEKVEYVVKCDMSAIQKVLYRHMQRGILLTDGSEKDKKGKGGAK
TLMNTIMQLKKICNHPYMFQHIEESFAEHLGFQNGVISGLDLYRASGKFELLDRILPKLQ
ATNHRVLLFCQMTTLMTILEDYFGYRNFQYLRLDGTTKSEDRAALLKKFNEEGSQYFIFL
LSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK
ILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILETEEQNEEEDEIPDDETLNQMI
ARNEDEFELFMRMDMDRRREEARNPKRKPRLMEEDELPSWIIRDEAEIERLTYEEEEEKM
FGRGSRCRRDVDYSDTLTEKQWLRAIEDGNLEEMEEEIRLKKRKRKRRQDKDSSSRDDGG
SKAKKKRGRPPAEKHSPNPPKLTKQMNTIIDTVINYRDGSGRQLSEVFVQLPSRKELPEY
YELIRKPVDFKKIKDRVRNHKYRSVGDLERDVMLLCHNAQTFNLEGSQIYEDSIVLQSVF
KSARQKIAKDEESEDESDEEEEDEDESEAEAKSVRVKIKLSKEPRSTDKGKKRQSRGKAK
PVVSDDDSDEDLDDNDQSDKSDDD
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccttcagacacatcaggtggtatgtcccatcctggcccttctccaggggca
ggtctatccccagggcccatcttgggccccagccctggaccggacccctcaccgggctct
gttcacagtatgatgggacccagtcctggacctggaacacccaacgcacctcatggaatg
cagggtcagggacaaagtgaatactctcaggacagcatgtatcctatgcacaagaccatg
gatggtatgaatgagaagaccatggcagatgcgatgcactttggtcacatgaaaggtgtt
gggatgagatctctgcatagtggtatggggcctccacagagtccgatggaccagcacagc
caaggatacatatccccacatccatctcccatgggtgtccatgagcatgcttctagtccc
atgtcaggaggtggtaggggacccacaccgccccacatgcctcctacccagtcaggccct
atgatacccatggatccccagtcagccgtgcccaacatgtccaacatgagccagcagggc
cggggaccttctgctttcagtccggtccagctgcagcagctcagagctcaaatcctggcc
tacaaaatcctaggccgtgggcaacccctgcctgaaaacctccaactggctgttcagggc
aagaggagtctacccacaatgcaacagcagcagcagcaacaacagcagccgcagcagcag
gcaccgattgctagtccttacaacaggcctccaggtatgccgatggcacctttgggtggt
ccccagtcaagtccctgccctaccccaaccatgcaaggacacaatcaaagcacaggaccc
aagccttggtctgatggtcagggtggtgaaaatcaagccaatgctcagaagcacctcacc
cctgttcccagtggacgcccgtcccctgcaccacctcaggtctctgctgtgccagctggg
ctcatgccaggcagttcagtgacccctcaacctcccgggcagcaggtgtcccccatgctt
cagatgcagaaacagaaccgcattacaccagtccagaagccccagggcttggacccagtg
gggatcctgcaagagcgagagtacaggttgcaggctcggattgcacatcgaatccaggaa
ctggaaagtttgccaggctctctgcccccagacctgaggactaaagctacagttgagctc
aaggcacttcgtctacttaacttccagcgccagctgagacaggacgtggtggcatgtatg
aggcgagacacgaccctggagacggccctcaactccaaggcttacagacgcagcaagcgg
cagacgctgagggaggctcgcatgactgagaagctggagaaacagcagaagctcgagcaa
gaaaagaagcgcagacagaaacatcaggaatatctcaacagtattcttcagcatgcaaag
gactttaaagagtatcaccgctcagtgtccggtaaaatgcagaaactcacccgagctatc
gccaactggcacaccaacacagagcgggaacagaagaaggagactgagagaatcgagaag
gagaggatgaggagactcatggcagaagatgaggaaggctaccgaaaactaattgaccaa
aagaaggacaagcgtctggcctacttgctgcagcagacggatgaatacgtggccaacctt
acaaccctggtgtacgaacacaaagctgcccaagcagccaaggagaagaagaagaaaaag
aagaaaaagaagatggcggatggagatggcgaaggccccagtgccattggacctgatgga
gagcccatggatgagagcagccaaatgagtgagctgccagtcaaagtgattcagacggag
acagggaaagttctgcagggaacggatgctcccaaatccagccagctggaggcctggctc
gagatgaaccctgggtatgaagtggctccgcggtcggacagcgaggagagcggctccgag
tttgaggaggaggaggaagaggagggtgccaaggcagagacggaggacaagaagatcatc
gatcccaatggagttgaaatgtttgtggtggctaccaagcacattatcgaatcagccaag
caggatgtggatgatgagtacagcgttcctactggacaaaccagctcccagtcttactat
ggtgtggcccatgctgtcattgagagggtagagaagcagtcgtcgctgctgatcaacggc
tcactcaaacattaccaggtccaggggctggagtggatggtgtccctctacaacaacaat
ctaaacggcatcctggcagatgaaatgggccttggcaaaaccatccaaaccatcgctctt
atcacctacctgatggagcataagaggatcaatggtccctttctcattattgttcctctc
tcgactttgtctaactgggtctatgaacttgacaagtgggcaccctctgtggtcaaaatt
gcttacaagggcacccctgtgttgcgccgtgggcttgttcctcaactccgcagcgggaag
ttcaacgtcttgctgaccacctatgaatacatcatcaaggacaagcacatactggccaag
attcgctggaagtacatgattgtggacgagggtcaccgcatgaagaaccaccactgtaag
ctgacccaggtgttgaacacccactatgtggctccccgccgcctcctcctcaccggtaca
cctctgcagaacaagctgcccgagctgtgggccctgctcaacttcctcctgcccaccatc
tttaagagctgcagcacctttgagcaatggttcaacgccccgttcgcaatgacaggagag
agggtcgacctgaatgaggaggagaccatcctgataatccggcgtttgcataaagtgctc
cgccccttcctgctacgcagactgaagaaggaggtggagtctcagctgccagagaaggtg
gagtatgtcgtaaaatgtgacatgtctgccatacagaaggttttgtaccgccacatgcag
agaggcatccttctcactgacggatcagagaaagacaaaaagggcaaaggaggagcaaag
accctgatgaacactatcatgcagctgaagaagatctgcaaccatccatacatgttccag
cacattgaggaatcttttgctgagcacttgggcttccaaaatggtgtcatcagtgggctt
gatctgtatcgagcttctgggaagtttgagctcctagatcgcatcctgcccaagctgcag
gccaccaaccacagagtcctgctgttctgccaaatgaccactctcatgacaatcttggag
gactactttggctaccgaaactttcagtatttacgtcttgacggaacaaccaagtctgag
gaccgagcagccctgctgaagaaatttaatgaggaaggatctcagtacttcattttcctg
ctcagcaccagagccggtggcctcggcctcaacctgcaggctgccgacactgtcgtcatc
tttgacagtgactggaacccacaccaggaccttcaggcgcaggaccgggctcaccgcatc
ggtcagcagaatgaggttcgtgtgcttcgtctctgcaccgtcaatagtgtggaggagaaa
atcttggcagctgccaaatacaaactcaacgtggatcagaaggtcatccaggcgggcatg
ttcgaccagaaatcctctagccatgaacgccgtgccttcctccaggccattttagagact
gaggagcagaatgaggaagaagatgagatacccgatgatgaaaccctcaaccagatgata
gcccgcaatgaagatgaatttgagcttttcatgcgcatggacatggaccgacgccgggag
gaagccaggaacccaaagcgcaagcctcgtctcatggaggaggacgagttgccttcttgg
atcattagagacgaggctgagatcgaacggctcacgtatgaagaggaggaggagaagatg
ttcggccgagggtcacgctgtcgtcgggatgtggactacagcgacaccctgactgaaaaa
cagtggctacgggccattgaggatggaaacctggaagagatggaggaggagatccgactg
aaaaagcgcaaacgcaaaagacgccaggacaaagactcgtcaagcagagacgacgggggc
tctaaggccaagaagaaacgtgggcgtccaccagctgagaaacactcccccaaccccccg
aaactcaccaagcaaatgaacaccataatcgacacggtcatcaactacagagatgggtca
ggaagacaactgagtgaggtcttcgtccagttgccatccaggaaggagctcccagaatat
tacgagctgatcagaaaacctgtggacttcaaaaagatcaaagatcgtgtgagaaaccat
aaatacaggagtgtgggagacctggagagggacgtgatgctgctttgtcacaacgcccag
accttcaaccttgagggatcccagatatacgaggactccattgtccttcagtctgtgttt
aagagtgccaggcagaagattgccaaggatgaagagagtgaagatgaaagcgatgaggag
gaggaggacgaggatgagtcagaagctgaggccaagtctgtgcgggttaagatcaagctg
agtaaggagccgcgcagcaccgacaaaggaaaaaagaggcaaagtcgagggaaggccaag
ccggtcgtcagcgacgacgacagcgacgaagacctggatgacaatgatcagtcggacaag
agcgacgatgactga
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integrated database retrieval system
